SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78156

Length: 305 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene78156
CGTCGTGACCTTGGCTGTCACTCAGCTTTATCTACAGCCGAAGCATAATATGTGGCTACTGCATCTTGTTGCACTCAACTTCTTTGGATGATGCAGACCTTACAAGATTTTCAAATCACTTGTACACCACCTATCTCCATCTTATGTGATAATACAAGTGCAATCATCATTTCAAAGAACCCAGTCATGCATTTAAAGACTAAGCACATACCGATCAAGTATCATTTTCTCAGGGACAAGTGCTTGAACAAAAGGTCAAGTTGGAGTATGTTCCTTCTAAGGAACGAGTTGCTGATATACTCACC

Ace file of the UniGene sp_v2.0_unigene78156

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (RNA-dependent DNA polymerase), putative n=1 Tax=Medicago truncatula RepID=Q1S5J6_MEDTR	-	-	2.0e-18	60%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	38%
Blast2go	retrotransposon unclassified	-	-	7.55313e-22	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P10978

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 101 - 1328

Fln protein: RRDLGCHSALSTAEA*YVATASCCTQLLWMMQTLQDFQITCTPPISILCDNTSAIIISKNPVMHLKTKHIPIKYHFLRDKCLNKRSSWSMFLLRNELLIYS

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTATCTACAGCCGAAGCATAATATGTGGCTACTGCATCTTGTTGCACTCAACTTCTTTGGATGATGCAGACCTTACAAGATTTTCAAATCACTTGTACACCACCTATCTCCATCTTATGTGATAATACAAGTGCAATCATCATTTCAAAGAACCCAGTCATGCATTTAAAGACTAAGCACATACCGATCAAGTATCATTTTCTCAGGGACAAGTGCTTGAACAAAAGGTCAAGTTGGAGTATGTTCCTTCTAAGGAACGAGTTGCTGATATACTCACC

Fln Alignment:

AllPineV4_rep_c119547___ALSTAEA*YVATASCCTQLLWMMQTLQDFQITCTPPISILCDNTSAIIISKNPVMHLKTKHIPIKYHFLRD
P10978_______________ALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain