SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78085

Length: 348 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene78085
CGTCGTGACCTTGGCTGTCACTCAATGGCCATGTTTGACAGGTTGACCAAGGTAGCTCACTTCATTCTAGCATAGTCTACGAATTCAGCTGGTGAAGTAGCGGAGGTCTTCATCAGAGATATAGTGAGGTTTCATGGTGTTCCAAAGAAGATTGTGTCAGACAGAGATACCATGTTCACTTCCATGTTTTGGAAAGAGTTATTTGCAGGTTTGGGTACAAAGTTGGTCTTTAGTACAACTTATCATCCATAGACATATGAACAAACAAAGAAGGTCAATAGGATTCTAGAGGACATGTTGAGAATGTATGCTATGCATCAACAACAGAAGTGGGAAGAGTATCTTCCA

Ace file of the UniGene sp_v2.0_unigene78085

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL	-	-	8.0e-27	52%
FL-Next	tr=Putative retrotransposon protein; Phyllostachys edulis.	-	-	0.0	52%
Blast2go	retrotransposon ty3-gypsy subclass	-	-	5.06301e-31	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	5.06301e-31	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D3IVJ7

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 116 - 1053

Fln protein: RRDLGCHSMAMFDRLTKVAHFILA*STNSAGEVAEVFIRDIVRFHGVPKKIVSDRDTMFTSMFWKELFAGLGTKLVFSTTYHP*TYEQTKKVNRILEDMLRMYAMHQQQKWEEYLP

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGCCATGTTTGACAGGTTGACCAAGGTAGCTCACTTCATTCTAGCATAGTCTACGAATTCAGCTGGTGAAGTAGCGGAGGTCTTCATCAGAGATATAGTGAGGTTTCATGGTGTTCCAAAGAAGATTGTGTCAGACAGAGATACCATGTTCACTTCCATGTTTTGGAAAGAGTTATTTGCAGGTTTGGGTACAAAGTTGGTCTTTAGTACAACTTATCATCCATAGACATATGAACAAACAAAGAAGGTCAATAGGATTCTAGAGGACATGTTGAGAATGTATGCTATGCATCAACAACAGAAGTGGGAAGAGTATCTTCCA

Fln Alignment:

AllPineV4_rep_c119156___RRDLGCHSM-AMFDRLTKVAHFILA*STNSAGEVAEVFIRDIVRFHGVPKKIVSDRDTMFTSMFWKELFAGLGTKLVFSTTYHP*TYEQTKKVNRILEDMLRMYAMHQQQKWEEYLP
D3IVJ7_______________RTQTGCDSIWVIIDRLTKVAHFIPVKTTYQSSKLAELYVAKIVCLHGVPKKIVSDRGSQFTSRFWKSLHEALGTRLNFSTAYHPQTDGQTERVNQVLEDMLRACALDYGKSWDKNLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain