SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78014

Length: 274 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene78014
CGTCGTGACCTTGGCTGTCACTCATGCTTCCATACCTGCTGATACGTCCAAGGTGTATGGTTGTGATCTTGGCTGTCTGTTTCAATTCCAAATCTCCGAATCCGAATGTGGCAACAGGGGCATTAGTTGGAGGACCTTTTCAGAATGATAGTTTCATTGATATTAGATCCAATCCCATGCAAAATGAACCAAGCACTTACAATAGTGCTGCTTTGGTAGGCCTCTTATCTGGATTACTCACTACTTCTTCTGTTGTTCAGTCTTTTATCTAGTT

Ace file of the UniGene sp_v2.0_unigene78014

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endoglucanase 2 [Arabidopsis thaliana] sp\|Q9FXI9.1\|GUN2_ARATH RecName: Full=Endoglucanase 2; AltName: Full=Endo-1,4-beta glucanase 2; Flags: Precursor gb\|AAG12562.1\|AC007797_22 Similar to endo-beta-1,4-glucanase [Arabidopsis thaliana] gb\|AAK82507.1\| At1g1	-	-	3.0e-11	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	endoglucanase 24-like	-	-	5.48151e-18	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.48151e-18	84%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	NADH:ubiquinone oxidoreductase, B12 subunit	IPR012576	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVI7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 90 - 532

Fln protein: S*PWLSLMLPYLLIRPRCMVVILAVCFNSKSPNPNVATGALVGGPFQNDSFIDIRSNPMQNEPSTYNSAALVGLLSGLLTTSSVVQSFI*

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCTTCCATACCTGCTGATACGTCCAAGGTGTATGGTTGTGATCTTGGCTGTCTGTTTCAATTCCAAATCTCCGAATCCGAATGTGGCAACAGGGGCATTAGTTGGAGGACCTTTTCAGAATGATAGTTTCATTGATATTAGATCCAATCCCATGCAAAATGAACCAAGCACTTACAATAGTGCTGCTTTGGTAGGCCTCTTATCTGGATTACTCACTACTTCTTCTGTTGTTCAGTCTTTTATCTAG___TT

Fln Alignment:

AllPineV4_rep_c118770___VCFNSKSPNPNVATGALVGGPFQNDSFIDIRSNPMQNEPSTYNXXXXXXXXXXXXXXXXXVQSF
A9NVI7_______________VWFKSKSPNPNVVTGALVGGPFLNDSFIDIRSNPMQNEPSTYNSAALVGLLSGLLTTSSVVQSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain