SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77919

Length: 277 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene77919
TTCGTTACACAAAAATATGTGTTTCAAGACTTTGTTTTAGGGTTTGAAGGCCGAACCCTTATAAAATGTTCCTAATAGTTTTAGTAAGGAAGTGCTTTGAGACCTGGTCCTTGCCTATGAGTACAGGCATGTTGTGCTTCCGCCTGACGTTGCCCGACTTCTTCCCAAGAATCGCCTGTTGAACGAGAATGAGTGGCGAGGAATTGGGGTGCAACAGCCTCGTGGGTGGGTGCACTATTGCTATCCAACCGTAAACCTGAGCCACACATCATGCTAT

Ace file of the UniGene sp_v2.0_unigene77919 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cyclin-dependent kinases regulatory subunit [Glycine max] gb\|ACU14766.1\| unknown [Glycine max]	-	-	2.0e-15	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	cyclin-dependent kinases regulatory subunit	-	-	5.52503e-22	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitotic cell cycle	GO:0000278	Biological Process	5.52503e-22	93%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	5.52503e-22	93%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	5.52503e-22	93%
Blast2go	protein binding	GO:0005515	Molecular Function	5.52503e-22	93%
Blast2go	cytoplasm	GO:0005737	Cellular Component	5.52503e-22	93%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin-dependent kinase, regulatory subunit	IPR000789	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLW6

Fln msg: Distance to subject end: 25 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 59 - 93

Fln protein: DLVLAYEYRHVVLPPDVARLLPKNRLLNENEWRGIGVQQPRGWVHYCYPTVNLSHTSCY

Protein Length: 60

Fln nts: TTCGTTACACAAAAATATGTGTTTCAAGACTTTGTTTTAGGGTTTGAAGGCCGAACCCTTATAAAATGTTCCTAATAGTTTTAGTAAGGAAGTGCTTTGAGACCTGGTCCTTGCCTATGAGTACAGGCATGTTGTGCTTCCGCCTGACGTTGCCCGACTTCTTCCCAAGAATCGCCTGTTGAACGAGAATGAGTGGCGAGGAATTGGGGTGCAACAGCCTCGTGGGTGGGTGCACTATTGCTATCCAACCGTAAACCTGAGCCACACATCATGCTAT

Fln Alignment:

AllPineV4_rep_c118318___YEYRHVVLPPDVARLLPKNRLLNENEWRGIGVQQPRGWVHY
A9NLW6_______________YEYRHVVLPPDVARLLPKNRLLTENEWRGIGVQQSRGWVHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain