SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77907

Length: 1120 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene77907

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative NAD-dependent formate dehydrogenase (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX85_PINPS	-	-	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	formate dehydrogenase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	88%
Blast2go	cuticle development	GO:0042335	Biological Process	88%
Blast2go	lipid biosynthetic process	GO:0008610	Biological Process	88%
Blast2go	response to light stimulus	GO:0009416	Biological Process	88%
Blast2go	response to cold	GO:0009409	Biological Process	88%
Blast2go	response to wounding	GO:0009611	Biological Process	88%
Blast2go	epidermal cell differentiation	GO:0009913	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	catalytic activity	GO:0003824	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	thylakoid	GO:0009579	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	88%
Blast2go	response to karrikin	GO:0080167	Biological Process	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV09

Fln msg: Overlapping hits, possible frame ERROR between 839 and 757, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 296 - 388

Fln protein: S*PWLSLNVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLNAAAAAGVTVAEVTGGNVVSVAEDELMRILILMRNFVPGYKQIVEGDWKVAAISYRSYDLEGKTIGTIGAGRIGKELLKRLKPFNCKLLYHDRLSIGPELEKETGATLETKLDEMLPKCDVVVINMPLSDKTRGMFNKEKISKLKKGVLIVNNARGAIMDAQAVADASASGQIGGYSGDVWFPQPAPKDHPWRSMPNHAMTPHISxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSQNYIVKEGSWAVYL*

Protein Length: 297

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTTGATTTCTACGCCTTTCCACCCGGCCTATGTGACAGCAGAGAGGATCAAGAAGGCAAAGAACTTAAAGCTTCTTTTGACAGCTGGTATTGGTTCTGATCACATTGATCTAAATGCTGCAGCAGCCGCTGGTGTGACTGTTGCAGAAGTTACAGGAgGTAATGTGGTGTCCGTGGCAGAAGATGAGCTAATGCGCATTCTCATATTGATGCGAAACTTTGTGCCTGGATATAAGCAAATTGTCGAGGGTGATTGGAAAGTGGCAGCAATTTCTTACAGGTCATATGATCTAGAAGGGAAAACTATTGGTACTATTGGTGCAGGGCGTATTGGCAAAGAACTACTTAAGCGTTTGAAGCCTTTCAATTGTAAGCTTCTTTACCACGACCGTCTTTCTATTGGACCCGAATTGGAAAAGGAAACTGGAGCAACATTGGAGACAAAACTTGACGAAATGCTACCTAAATGTGATGTAGTTGTCATTAATATGCCTCTTTCTGACAAAACTAGGGGAATGTTTAACAAGGAGAAAATCAGCAAGCTGAAGAAGGGTGTATTGATTGTGAATAATGCTCGAGGGGCCATCATGGATGCTCAAGCAGTCGCTGATGCTTCTGCAAGTGGACAAATTGGAGGTTACAGTGGAGATGTTTGGTTTCCTCAACCTGCTCCAAAAGATCATCCATGGCGCTCCATGCCAAACCATGCCATGACTCCCCATATCTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCGCAGAATTACATTGTGAAGGAAGGAAGCTGGGCAGTCTACCTATAAAATTAATGTGATCTAAGGCAGATGATCATCCTGTGAAGGCTGCTTAACCTGATACAGCAGAGCCAGATGAGCTGCTTCCTCCGATAAAATGTGCATCAATATTGAGTGTCAATCATCCTGAGCCATGAGCTCAAGCTATTGCAGATGATGATGAGATTGCATACGCATCCACGATTTAGTAATTTAAAACTACCTAAATGATGACACGTTACCTGCATCCTATGCCCGTGGA

Fln Alignment:

AllPineV4_rep_c118268___LNVLISTPFHPAYVTAERIXXXXXXXXXXTAGIGSDHIDLXXXXXXXXXXXXXXXXXXXSVAEDELMRILILMRNFVPGYKQIVEGDWKVAAISYRSYDLEGKTIGTIGAGRIGKELLKRLKPFNCKLLYHDRLSIGPELEKETGATLETKLDEMLPKCDVVVINMPLSDKTRGMFNKEKISKLKKGVLIVNNARGAIMDAQAVADASASGQIGGYSGDVWFPQPAPKDHPWRSMPNHAMTPHISxxxxxxxxxxxxxxxxxxxxxxxxxxxxSQNYIVKEGSWA
A9NV09_______________LHVLISTPFHPAYMTAERIKKAKNLKLLLTAGIGSDHIDLNAAAAAGVTVSEVTGSNVVSVAEDELMRILILVRNFVPGYKQIVNGDWKVAAISYRSYDLEGKTIGTIGAGRIGKELLKRLKPFNCKLLYHDRLSIGPELEKETGATLETNLDDMLPKCDVVVINMPLSDKTRGMFNKEKISKMKKGVLIVNNARGAIMDAQAVADASASGHIGGYSGDVWFPQPAPKDHPWRSMPNHAMTPHISxxxxxxxxxxxxxxxxxxxxxxxxxxxxPQHYIVKEGKLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain