SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77724

Length: 341 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene77724
ATGGGCAACGATCCCAATTCCAAAAAGTTACTTTCAACTGAGTGTAGTCATCATATAGAGGAAGTTATTGATGTAGGAGTTCTTCCTCACTTTGTTGAATTCGTGGCGAGGCATGATTTTCCACTGTTATAGTTTGAAGCAACACGGGTGTTGAAAAACATAGCTTCAGGAACGTCAGATCATACACGAGTTATGATTGACTGTGGAGATTTGCCAATATTTGTGTAACTGCTAAGTTCACCAAGTGATGATGTTCGTGAGCAAGTTAGGGAACTCTTTTTTAATGTTTCTGATACAAAGTTTTTGTCCATTATTTATTTCTGCAGTAGAGAATTTTTACC

Ace file of the UniGene sp_v2.0_unigene77724

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	importin alpha 1 [Capsicum annuum]	-	-	1.0e-20	61%
FL-Next	sp=Importin subunit alpha; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	65%
Blast2go	protein	-	-	5.93971e-26	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	symbiont intracellular protein transport in host	GO:0030581	Biological Process	5.93971e-26	73%
Blast2go	host response to induction by symbiont of tumor, nodule or growth in host	GO:0080034	Biological Process	5.93971e-26	73%
Blast2go	protein binding	GO:0005515	Molecular Function	5.93971e-26	73%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Importin-alpha, importin-beta-binding domain	IPR002652	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22478

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 323 aas, your sequence is shorter than subject: 76 - 527

Fln protein: MGNDPNSKKLLSTECSHHIEEVIDVGVLPHFVEFVARHDFPLL*FEATRVLKNIASGTSDHTRVMIDCGDLPIFV*

Protein Length: 77

Fln nts: ATGGGCAACGATCCCAATTCCAAAAAGTTACTTTCAACTGAGTGTAGTCATCATATAGAGGAAGTTATTGATGTAGGAGTTCTTCCTCACTTTGTTGAATTCGTGGCGAGGCATGATTTTCCACTGTTATAGTTTGAAGCAACACGGGTGTTGAAAAACATAGCTTCAGGAACGTCAGATCATACACGAGTTATGATTGACTGTGGAGATTTGCCAATATTTGTGTAACTGCTAAGTTCACCAAGTGATGATGTTCGTGAGCAAGTTAGGGAACTCTTTTTTAATGTTTCTGATACAAAGTTTTTGTCCATTATTTATTTCTGCAGTAGAGAATTTTTACC

Fln Alignment:

AllPineV4_rep_c117478___KKLLSTECSHHIEEVIDVGVLPHFVEFVARHDFPLL*FEATRVLKNIASGTSDHTRVMIDCGDLPIFV*LLSSPSDDVREQ
O22478_______________RKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain