SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77719

Length: 340 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene77719
CGTCGTGACCTTGGCTCACACGAAGATTGATCTCTATGTTGGAAAGGAAGTTGTCAAAAGAGGTATAGCAATGGAGCAAGCATGTGATGCTTTAATTCAGTTGATTAAGGACTATGGGCGATGGGTCGATCCTCCTGCTGAAGAATAATTTGGGACTGCTGCCCGTCTTAAATGTTTCAGTCAAGCTATTTAACATATCAGCATCGTAAGTACAACCTGTGTTAGAAGGCAACAAAGGATCTGAGCTCAAACCAGTCCTCCAGTCCTCTGCCCTACAAAAAGATCCCCAACAAGTCCTCTGAAAACGGTGGGGCAATGGACTGGAGGACTGGTTTGAGCT

Ace file of the UniGene sp_v2.0_unigene77719 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase n=1 Tax=Ginkgo biloba RepID=A9CBE3_GINBI	-	-	1.0e-13	90%
FL-Next	tr=(E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase; Ginkgo biloba (Ginkgo) (Maidenhair tree).	-	-	0.0	90%
Blast2go	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	-	-	1.06608e-15	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	1.06608e-15	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type	IPR004588	-	0.0	-
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical	IPR017178	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9CBE3

Fln msg: your sequence is shorter than subject: 49 - 741

Fln protein: VVTLAHTKIDLYVGKEVVKRGIAMEQACDALIQLIKDYGRWVDPPAEE*

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTCACACGAAGATTGATCTCTATGTTGGAAAGGAAGTTGTCAAAAGAGGTATAGCAATGGAGCAAGCATGTGATGCTTTAATTCAGTTGATTAAGGACTATGGGCGATGGGTCGATCCTCCTGCTGAAGAATAA___TTTGGGACTGCTGCCCGTCTTAAATGTTTCAGTCAAGCTATTTAACATATCAGCATCGTAAGTACAACCTGTGTTAGAAGGCAACAAAGGATCTGAGCTCAAACCAGTCCTCCAGTCCTCTGCCCTACAAAAAGATCCCCAACAAGTCCTCTGAAAACGGTGGGGCAATGGACTGGAGGACTGGTTTGAGCT

Fln Alignment:

AllPineV4_rep_c117446___KIDLYVGKEVVKRGIAMEQACDALIQLIKDYGRWVDPPAEE
A9CBE3_______________KIDLYVGKEVVKRGIAMDQATDALIQLIKDHGRWVDPPVEE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
294		66	33		0.997453
295	33	66			0.997454
299	33	66			0.997476
302	66		33		0.997452
305		33		66	0.997453
310	66		33		0.997452
315	66		33		0.997452
316	33			66	0.997452
318			33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain