SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77672

Length: 346 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene77672
ATGGGGACCTTTCCACAGTACATGCCTTATCGAATGGCTGCGATCCATCGTCGTGACCTTGGCTGTCACTGATGTTCTATTTGGCAATTGTCCTTATTGTTCTCATCCTATTGCAGTCAAAACTACTTTTCAATGACATTAAAATATGGTAAAGTTCTTGTTATTTGTCTCCTCATCTGGAGTCTGGAGTTGGAAGATAATAAAGAAGTAAAGGTTGGCTTTTATTAAGCTGCAAATTTGGAGTTTGAATATGTTTCTTATCTATTCAGTTATATAGCAATTTTGTCCTTGTTTTTGTTGAGGTGTAAGTGCAGTTGAATGCTGGTTTATGCGAATATGGAATCCG

Ace file of the UniGene sp_v2.0_unigene77672

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc ion binding protein n=3 Tax=Arabidopsis thaliana RepID=F4JXJ5_ARATH	-	-	6.0e-09	69%
FL-Next	tr=Putative uncharacterized protein At5g65740/MPA24_9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Blast2go	zinc ion binding protein	-	-	9.43674e-11	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	9.43674e-11	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	9.43674e-11	73%
Blast2go	DNA repair	GO:0006281	Biological Process	9.43674e-11	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	9.43674e-11	73%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	9.43674e-11	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q8GWK0

Fln msg: your sequence is shorter than subject: 45 - 216

Fln protein: WGPFHSTCLIEWLRSIVVTLAVTDVLFGNCPYCSHPIAVKTTFQ*

Protein Length: 46

Fln nts: ATGGGGACCTTTCCACAGTACATGCCTTATCGAATGGCTGCGATCCATCGTCGTGACCTTGGCTGTCACTGATGTTCTATTTGGCAATTGTCCTTATTGTTCTCATCCTATTGCAGTCAAAACTACTTTTCAATGA___CATTAAAATATGGTAAAGTTCTTGTTATTTGTCTCCTCATCTGGAGTCTGGAGTTGGAAGATAATAAAGAAGTAAAGGTTGGCTTTTATTAAGCTGCAAATTTGGAGTTTGAATATGTTTCTTATCTATTCAGTTATATAGCAATTTTGTCCTTGTTTTTGTTGAGGTGTAAGTGCAGTTGAATGCTGGTTTATGCGAATATGGAATCCG

Fln Alignment:

AllPineV4_rep_c117232___FHSTCLIEWLRSIVVTLAVTDVLFGNCPYCSHPIAVKTT
Q8GWK0_______________FHSLCLTDWLRSITTTRQSFDVLFGNCPYCSDPVAVKTS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
49		75		25	0.996481
50	25		75		0.99649
51		25		75	0.99649
52	50	50			1.0
53	33		33	33	0.997753
54		50		50	1.0
57	25	75			0.99649
59	25			75	0.99649
60		33		66	0.997452
62	33		66		0.997452
64	33			66	0.997452
71		66		33	0.997452
75		50	50		1.0
167	66		33		0.997452
179	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain