SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77553

Length: 458 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene77553
CTTATAAATATCCGCTGTTCCCCTTACGGCAATTCATACTGTCCATTTCGTTTGCGCATCAGACCTGAAATGAACCGACCTTTCTCTACTCAGGTTAAATGACTACATGAGATATTGCACAGCGTATAAATATCCGCTCTTCCCCGTCGTGACCTTGGCTGTCACTCAGTTTGCGCATCAGACATTCATCGAATCGGCAATTCATACTGTCCATTTCTTCAATCACGCAATTGTTTGCGGATCAGGCATTATCGAATCAATTACACCTGTGCAACAATGGCGCACAAGGGAGAAGCTTCAGAACCGAAAGGAGTCAAAAGGATTTTAGCACTGCTATTTTGGAGCGCAAGAAAGCTCCCAAATCGCCTTGTGTCGATGAGGCTATCAACGACGATAACTCTGTGGTCTGTCTGCATCCGGACACCATGGAAAAAATTACAGCTCTTCCGCGGAGATAC

Ace file of the UniGene sp_v2.0_unigene77553

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell division control protein 48 homolog D n=25 Tax=Magnoliophyta RepID=CD48D_ARATH	-	-	2.0e-10	66%
FL-Next	sp=Cell division cycle protein 48 homolog; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	64%
Blast2go	cell division cycle protein 48 homolog	-	-	1.1276e-13	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell division	GO:0051301	Biological Process	1.1276e-13	78%
Blast2go	pollen tube growth	GO:0009860	Biological Process	1.1276e-13	78%
Blast2go	pollen germination	GO:0009846	Biological Process	1.1276e-13	78%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.1276e-13	78%
Blast2go	identical protein binding	GO:0042802	Molecular Function	1.1276e-13	78%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.1276e-13	78%
Blast2go	cell wall	GO:0005618	Cellular Component	1.1276e-13	78%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.1276e-13	78%
Blast2go	spindle	GO:0005819	Cellular Component	1.1276e-13	78%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	1.1276e-13	78%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	1.1276e-13	78%
Blast2go	phragmoplast	GO:0009524	Cellular Component	1.1276e-13	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.1276e-13	78%

Source	InterPros	Term	Type	Identity
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P54774

Fln msg: Distance to subject end: 746 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 102 - 807

Fln protein: PWLSLSLRIRHSSNRQFILSISSITQLFADQALSNQLHLCNNGAQGRSFRTERSQKDFSTAILERKKAPKSPCVDEAINDDNSVVCLHPDTMEKITALPRRY

Protein Length: 103

Fln nts: CTTATAAATATCCGCTaTTCCCCTTACGGCAATTCATACTGTCCATTTCGTTTGCGCATCAGACCTGAAATGAACCGACCTTTCTCTACTCAGGTTAAATGACTACATGAGATATTGCACAGCGTATAAATATCCGCTCTTCCCCGTCGTGACCTTGGCTGTCACTCAGTTTGCGCATCAGACATTCATCGAATCGGCAATTCATACTGTCCATTTCTTCAATCACGCAATTGTTTGCGGATCAGGCATTATCGAATCAATTACACCTGTGCAACAATGGCGCACAAGGGAGAAGCTTCAGAACCGAAAGGAGTCAAAAGGATTTTAGCACTGCTATTTTGGAGCGCAAGAAAGCTCCCAAATCGCCTTGTGTCGATGAGGCTATCAACGACGATAACTCTGTGGTCTGTCTGCATCCGGACACCATGGAAAAAATTACAGCTCTTCCGCGGAGATAC

Fln Alignment:

AllPineV4_rep_c116746___QGRSFRTERSQKDFSTAILERKKAPKSPCVDEAINDDNSVVCLHPDTMEKI
P54774_______________QGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
146			75	25	0.99649
151			25	75	0.99649
152		25	75		0.99649
154	25	75			0.99649
155		75		25	0.99649
158	33			66	0.997452
159			66	33	0.997452
160	33		66		0.997452
168		66		33	0.997452
170		66		33	0.997452
171	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain