SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77483

Length: 489 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene77483
CGTCGTTACTGGCTGTTCTCAATTTCTCTCCGTGTAAAATATAAATTACCAACCATTCCATTTGTTTTTGGAGTATTCTCCGTGTAAAATTATAAACTTCGTGCCCTTTGCTGTCTCTCATATTGTGATTGTGATTTCAACTCCATATTCCTACAGCATTTGCAACCCTAACATGGACTGTGAAAATTGCTTCCAGGAAACAGCAATTAAAGACAAAATACAGGAGAGCCTGAAGAGGCAGAACTCAAGAAGTCTATCACCTTCAGAAATGCTGGAGAACACAGTGCAGTAGCATAAACTTGTGCTATCTGCCAAGTGATGCATTGATTCTTACTAGACAATTTTTGTATGTCTCCTACATTTTGACATTTTGTTCAACCGCTGGTTGTTTATATCGTTTCTCTTTCATCCTTTGTTAACCGTTTCAAGTCCTATGGTGTTTACGGTCAAGCACCGTGATGCTCATAAGCTATGTAATAAATCAAATTG

Ace file of the UniGene sp_v2.0_unigene77483

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 97 - 315

Fln protein: VVTGCSQFLSV*NINYQPFHLFLEYSPCKIINFVPFAVSHIVIVISTPYSYSICNPNMDCENCFQETAIKDKIQESLKRQNSRSLSPSEMLENTVQ*

Protein Length: 98

Fln nts: CGTCGTTACTGGCTGTTCTCAATTTCTCTCCGTGTAAAATATAAATTACCAACCATTCCATTTGTTTTTGGAGTATTCTCCGTGTAAAATTATAAACTTCGTGCCCTTTGCTGTCTCTCATATTGTGATTGTGATTTCAACTCCATATTCCTACAGCATTTGCAACCCTAACATGGACTGTGAAAATTGCTTCCAGGAAACAGCAATTAAAGACAAAATACAGGAGAGCCTGAAGAGGCAGAACTCAAGAAGTCTATCACCTTCAGAAATGCTGGAGAACACAGTGCAGTAG___CATAAACTTGTGCTATCTGCCAAGTGATGCATTGATTCTTACTAGACAATTTTTGTATGTCTCCTACATTTTGACATTTTGTTCAACCGCTGGTTGTTTATATCGTTTCTCTTTCATCCTTTGTTAACCGTTTCAAGTCCTATGGTGTTTACGGTCAAGCACCGTGATGCTCATAAGCTATGTAATAAATCAAATTG

Fln Alignment:

AllPineV4_rep_c116453___ENC-FQETAIKDKIQESLKRQNSRSLSPSEML
A9NUF9_______________EGCHMMETAIKEKIQESLKRQNSRSPSPSKMV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
101			50	50	1.0
102	50			50	1.0
105	50			50	1.0
107	50	50			1.0
109	50	50			1.0
114			50	50	1.0
115	50		50		1.0
116	50	50			1.0
118	50		50		1.0
121	50			50	1.0
122	50	50			1.0
123			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
101			50	50	1.0
102	50			50	1.0
105	50			50	1.0
107	50	50			1.0
109	50	50			1.0
114			50	50	1.0
115	50		50		1.0
116	50	50			1.0
118	50		50		1.0
121	50			50	1.0
122	50	50			1.0
123			50	50	1.0

Position	A %	C %	G %	T %	Probability
101			50	50	1.0
102	50			50	1.0
105	50			50	1.0
107	50	50			1.0
109	50	50			1.0
114			50	50	1.0
115	50		50		1.0
116	50	50			1.0
118	50		50		1.0
121	50			50	1.0
122	50	50			1.0
123			50	50	1.0

Position	A %	C %	G %	T %	Probability
101			50	50	1.0
102	50			50	1.0
105	50			50	1.0
107	50	50			1.0
109	50	50			1.0
114			50	50	1.0
115	50		50		1.0
116	50	50			1.0
118	50		50		1.0
121	50			50	1.0
122	50	50			1.0
123			50	50	1.0