SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77476

Length: 355 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene77476
CGTCGTGACCTTGGCTGTCACTCATTTTTCCTTCTACTGTTTAATTCATTTTGCAACATTGTGAAAATTGGTTTCAATGTTAACCAAATTTGAAACCAAGAGCAATAGGGTAAAGGGTCTCAGTTTTCATCCAAAGAGGCCATGGATCCTGGCAAGTCTTCACAGTGGAGTTATTCAGTTGTGGGACTATCGGATGGGAACTCTGATAGACAAATTCGATGAACATGATGGACCTGTTCGAGGAGTTCATTTTCACAAGACACAGCCACTCTTTGTGTCTGGAGGTGATGATTACAAGATTAAGGTCTGGAACTACAAGATGCGTCAATGCCTCTTTACATTTGTAGGGCACCTT

Ace file of the UniGene sp_v2.0_unigene77476

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer alpha subunit-like protein [Lotus japonicus]	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	96%
Blast2go	intracellular transport	GO:0046907	Biological Process	96%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	96%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	96%
Blast2go	membrane	GO:0016020	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 202 aas, your sequence is shorter than subject: 118 - 399

Fln protein: VVTLAVTHFSFYCLIHFATL*KLVSMLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDKFDEHDGPVRGVHFHKTQPLFVSGGDDYKIKVWNYKMRQCLFTFVGHL

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCCTTCTACTGTTTAATTCATTTTGCAACATTGTGAAAATTGGTTTCAATGTTAACCAAATTTGAAACCAAGAGCAATAGGGTAAAGGGTCTCAGTTTTCATCCAAAGAGGCCATGGATCCTGGCAAGTCTTCACAGTGGAGTTATTCAGTTGTGGGACTATCGGATGGGAACTCTGATAGACAAATTCGATGAACATGATGGACCTGTTCGAGGAGTTCATTTTCACAAGACACAGCCACTCTTTGTGTCTGGAGGTGATGATTACAAGATTAAGGTCTGGAACTACAAGATGCGTCAATGCCTCTTTACATTTGTAGGGCACCTT

Fln Alignment:

AllPineV4_rep_c116422___FETK--SNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDKFDEHDGPVRGVHFHKTQPLFVSGGDDYKIKVWNYKMRQCLFTFVGH
B8LPU3_______________FELKGHTDSVVALSFSNDGLLLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGQLVLAGSEDYTTWMWNADLGKCLSVYTGH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain