SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77310

Length: 213 nt

UniGene Fasta

>sp_v2.0_unigene77310
ACCTATTAGGGTTGCCAAGAACCTTCGGATCTGTGGCGACTGTCACGTTGCTATAAAGTTCATTTCAGCAATTGTTGGACGGCAAATTATTGTGAGGGATACAAACCGTTTCCATCATTTCATCGATGGTCACTGTTCTTGTGGGGATTATTGGTAACATTAGCTATACTGAGCAAAATACTGCAAGTTCACTTAACAAGGAATTGGACCTCC

Ace file of the UniGene sp_v2.0_unigene77310

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	pentatricopeptide repeat-containing protein at3g49142-like	-	-	9.68785e-24	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 52 - 246

Fln protein: PIRVAKNLRICGDCHVAIKFISAIVGRQIIVRDTNRFHHFIDGHCSCGDYW*

Protein Length: 53

Fln nts: ACCTATTAGGGTTGCCAAGAACCTTCGGATCTGTGGCGACTGTCACGTTGCTATAAAGTTCATTTCAGCAATTGTTGGACGGCAAATTATTGTGAGGGATACAAACCGTTTCCATCATTTCATCGATGGTCACTGTTCTTGTGGGGATTATTGGTAA___CATTAGCTATACTGAGCAAAATACTGCAAGTTCACTTAACAAGGAATTGGACCTCC

Fln Alignment:

AllPineV4_rep_c115598___PIRVAKNLRICGDCHVAIKFISAIVGRQIIVRDTNRFHHFIDGHCSCGDYW
D5AAE0_______________PVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

SNPs (tot: 3)

Position	A %	C %	T %	Probability
64	33		66	0.997476
91		33	66	0.997452
123	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain