SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77176

Length: 501 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene77176
CGTCGTGACCTTGGCTGTCACTCATCTGTCTTATGTGGGGGATCAACTGGTGTCTTCATCTTTGGGTACTGCTTATATTATTATTTTGCACGATCAGACATGAATGGTTTCATGCAAACCTCCGTGTGCCTTGGCTGTCACTCATCTGCTATGGCTTTTTCTTAATGCTCGGAACAGTGGGCTTCCGTGCATCTTTACTGTTTGTCCGTCATATCTATCGCTCAATTAAGTGCGAATAATTATATTCCTAGGTGTAGTGAACTTCTAGGCTTCATCGGACATTGTTCGGAGGTGCAGTTGCATGTAATGGCCATATTTTCTCTTTTCAAGATGACGGGTTATGACTCAAGGATACATGAACTCGATGATCATAGAGAAGAAAATGAAAGGAAATTTCAAACGAGAATCATGTAGTCTTTTATTGTATTTGTTAGGTTTCCAAAGCTTTAGTGTAGCGGACTGACTAACAAGGTTGTTGCGGAAGAGTAAAAACATTGAAAT

Ace file of the UniGene sp_v2.0_unigene77176

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AL750688 RN Pinus pinaster cDNA clone RN06C01 similar to MULTISPANNING MEMBRANE, mRNA sequence.	-	-	0.0	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	endomembrane protein 70	-	-	4.88337e-27	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	4.88337e-27	95%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	4.88337e-27	95%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	4.88337e-27	95%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-
Sma3	Ribosomal protein L13, bacterial-type	IPR005823	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW90

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 135 and 132, your sequence is shorter than subject: 80 - 585

Fln protein: RRDLGCHSSVLCGGSTGVFIFGYCLYYYFARSDMNGFMQTSVCxxxSLICYGFFLMLGTVGFRASLLFVRHIYRSIKCE*

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGTCTTATGTGGGGGATCAACTGGTGTCTTCATCTTTGGGTACTGCTTATATTATTATTTTGCACGATCAGACATGAATGGTTTCATGCAAACCTCCGTGTGCxxxxxxxxxTCACTCATCTGCTATGGCTTTTTCTTAATGCTCGGAACAGTGGGCTTCCGTGCATCTTTACTGTTTGTCCGTCATATCTATCGCTCAATTAAGTGCGAATAATTATATTCCTAGGTGTAGTGAACTTCTAGGCTTCATCGGACATTGTTCGGAGGTGCAGTTGCATGTAATGGCCATATTTTCTCTTTTCAAGATGACGGGTTATGACTCAAGGATACATGAACTCGATGATCATAGAGAAGAAAATGAAAGGAAATTTCAAACGAGAATCATGTAGTCTTTTATTGTATTTGTTAGGTTTCCAAAGCTTTAGTGTAGCGGACTGACTAACAAGGTTGTTGCGGAAGAGTAAAAACATTGAAAT

Fln Alignment:

AllPineV4_rep_c114887___SVLCGGSTGVFIFGYCLYYYFARSDMNGFMQTSVCLGWLSLICYGFFLMLGTVGFRASLLFVRHIYRSIKCE
A9NW90_______________SVLCGGSTGVFIFGYCLYYYFARSDMNGFMQTSFFFGYMTCICYGFFLMLGTVGFRASLLFVRHIYRSIKCE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
130		66		33	0.997476
135		66		33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain