SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77135

Length: 633 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene77135 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RE92_RICCO	-	-	1.0e-17	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	amino acid binding	-	-	3.0078e-21	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	3.0078e-21	88%
Blast2go	regulation of asymmetric cell division	GO:0009786	Biological Process	3.0078e-21	88%
Blast2go	lateral root formation	GO:0010311	Biological Process	3.0078e-21	88%
Blast2go	root cap development	GO:0048829	Biological Process	3.0078e-21	88%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	3.0078e-21	88%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	3.0078e-21	88%
Blast2go	endocytic vesicle	GO:0030139	Cellular Component	3.0078e-21	88%
Blast2go	cell surface	GO:0009986	Cellular Component	3.0078e-21	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.0078e-21	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	0.0	-
Sma3	Protein-PII uridylyltransferase	IPR010043	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
177		20		80	0.995493
331	80		20		0.995494
450		25	75		0.996473
451	75	25			0.996473
453		25		75	0.996473
454	25			75	0.996474
457		33		66	0.997453
458		33		66	0.997453
460	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain