SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene77004

Length: 1017 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene77004

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ring zinc finger protein-like protein [Oryza sativa Japonica Group]	-	-	8.99999e-40	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	e3 ubiquitin-protein ligase at4g11680-like isoform 2	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	RNA-metabolising metallo-beta-lactamase	IPR011108	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSJ7

Fln msg: Separated hits, possible frame ERROR between 424 and 562, Distance to subject end: 47 aas, your sequence is shorter than subject: 315 - 397

Fln protein: MDRTRVVRQSDSSPDVAVDTTPLLGNGNGSPNASEEGARSLSRRASIQGAARFLRRASSRRIMREPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNLAFVVVATVVLVLSRHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRTSIAKRLESANTMFSFIWWIVGFYWISAGGQVLINEAPQLYWLCVVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPKYKFKSIGGSGKISGEKSGPFGGVMSLSTGESSSERVLSAEDAECCICLSTYD

Protein Length: 316

Fln nts: ATGGGGGCTTGAAGTGCTGTTAGAGCTTCGTCGGAGGAGAAGTTTAAAGAGGGGAAGTAAAGAAGGCGGTCAC_-_ATGGATCGAACGAGGGTGGTTAGGCAGTCGGATTCGTCCCCAGACGTAGCAGTGGACACTACTCCGCTTCTGGGGAACGGGAATGGATCGCCGAATGCGAGCGAGGAAGGCGCCAGAAGTCTGTCGCGGAGGGCGAGCATACAGGGTGCGGCGCGATTTCTGCGGAGGGCTAGCAGCCGTAGAATCATGAGGGAGCCCTCCATGCTGGTCCGAGAGACAGCCGCGGAACAGCTGGAGGAACGGCAGAGCGACTGGGCATATTCAAGGCCAGTGGTCGTCCTTGACATAATATGGAACCTGGCATTTGTTGTTGTGGCGACGGTGGTGCTCGTCCTCAGCAGGCACAGCAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCGGACTAGCATAGCAAAGCGGTTGGAGTCTGCCAACACAATGTTTTCTTTTATATGGTGGATAGTTGGATTTTACTGGATATCTGCTGGTGGTCAGGTTTTAATTAATGAAGCTCCTCAGCTTTACTGGCTTTGCGTTGTGTTTCTGGCATTTGATGTATTTTTCGTAGTCTTCTGTGTGGCACTAGCCTGCGTAATTGGCATAGCTGTGTGCTGTTGCCTGCCATGCATTATTGCCATTTTGTATGCTGTGGCAGATCAGGAGGGGGCATCTGAAGAGGACATTGGCCTTCTTCCGAAATATAAATTCAAGTCCATTGGAGGTTCTGGAAAAATCAGTGGTGAGAAATCTGGGCCTTTCGGAGGAGTCATGAGTTTATCCACTGGAGAATCATCAAGTGAACGGGTTCTTTCTGCAGAGGATGCAGAGTGCTGCATTTGTCTGTCTACTTATGAT

Fln Alignment:

AllPineV4_rep_c113901___MDRTRVVRQSDSSPDVAVDTTPLLGNGNGSPNASEEGARSLSRRASIQGXXXXXXXXXXXXXXXEPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNXXXXXXXXXXXXXSRHSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRTSIAKRLESANTMFSFIWWIVGFYWISAGGQVLINEAPQLYWXXXXXXXXXXXXXXXXXXXXXXIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPXXXXXXXXXXXXXXXXXXXPFGGVMSLSTGESSSERVLSAEDAECCICLSTYD
C0PSJ7_______________MDRTRVVRQSDSSPDVAVDTTPLLGNGTGSPNASDDGARSLSRRASIQGAARFLRRASSRRIMREPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNLAFVVVATVVLVLSRHENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRTSIAKRLESANTMFSFIWWIVGFYWISAGGQILTHDAPQLYWLCVVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPKYKFKSIGGSEKISGEKSGPFGGIMNLCTGESSTERVLSAEDAECCICLSTYD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
714	87			12	0.992554
718	12		87		0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
459	477	TAA TAA TAA TAA TAA TAA T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain