SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76937

Length: 508 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene76937
CGTGGTGGCACGCCCATTGAATCTTTTTTTGTATCTTGTAAATCTTCCTGGGTTACTCCGATGTTTTTGATATTTTTATTACTATTATAAATTCTGGCATAGCTCACTGTTTGGAAGTTGCTATAAATAGGTCTGGTCCTGAAATATACTCTGTATTTGTGGATCAGATTCTGGGCAATATGGCTTCGGATGCCAAGGTCTACAAACTTGAAGATGTTTCAAGACATAACACTCATCAGGATTGCTGGATAGTGATTGAAGGAAAGGTGTATGATGTAACCAAATTTTTGGAGGACCATCCTGGCGGAGATGAAGTGTTGATCTCAGCAACTGGTAAAGATGCAACCGATGACTTTGAAGATGTTGGACATAGTGACAGTGCTAGAGCTATGATGGATGAATATTACGTGGGAGACATAGATCCCTCATCAGTTCCCTCGAAGCCAAAATACACTCCGGCTAAGCAGGCACCATACAATCCTGACAAGTCATCTGAATTTATCATAAA

Ace file of the UniGene sp_v2.0_unigene76937

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome b5 isoform Cb5-C [Vernicia fordii]	-	-	1.00053e-42	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	cytochrome b5	-	-	0.0	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b5	IPR001199	-	0.0	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NST8

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 109 - 134

Fln protein: MASDAKVYKLEDVSRHNTHQDCWIVIEGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSDSARAMMDEYYVGDIDPSSVPSKPKYTPAKQAPYNPDKSSEFII

Protein Length: 110

Fln nts: CGTGGTGGCACGCCCATTGAATCTTTTTTTGTATCTTGTAAATCTTCCTGGGTTACTCCGATGTTTTTGATATTTTTATTACTATTATAAATTCTGGCATAGCTCACTGTTTGGAAGTTGCTATAAATAGGTCTGGTCCTGAAATATACTCTGTATTTGTGGATCAGATTCTGGGCAAT_-_ATGGCTTCGGATGCCAAGGTCTACAAACTTGAAGATGTTTCAAGACATAACACTCATCAGGATTGCTGGATAGTGATTGAAGGAAAGGTGTATGATGTAACCAAATTTTTGGAGGACCATCCTGGCGGAGATGAAGTGTTGATCTCAGCAACTGGTAAAGATGCAACCGATGACTTTGAAGATGTTGGACATAGTGACAGTGCTAGAGCTATGATGGATGAATATTACGTGGGAGACATAGATCCCTCATCAGTTCCCTCGAAGCCAAAATACACTCCGGCTAAGCAGGCACCATACAATCCTGACAAGTCATCTGAATTTATCATAAA

Fln Alignment:

AllPineV4_rep_c113377___MASDAKVYKLEDVSRHNTHQDCWIVIEGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSDSARAMMDEYYVGDIDPSSVPSKPKYTPAKQAPYNPDKSSEFII
A9NST8_______________MDSDTKVYRLEDVSKHNTHQDCWLVIDGKVYDVTKFLEDHPGGDEVLISATGKDATDDFEDVGHSSSARAMMDEYYVGDIDPSTIPSKPKYTPAKQAPYNPDKSSEFII

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
130			14	85	0.993533
155		11	88		0.999952
156	11			88	0.999952
202		88		11	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain