SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76880

Length: 618 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene76880 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NEDD8-like protein RUB1 [Arabidopsis thaliana] sp\|Q9SHE7.3\|RUB1_ARATH RecName: Full=Ubiquitin-NEDD8-like protein RUB1; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=NEDD8-like protein RUB1; AltName: Full=Ubiquitin-related protein 1; Short=AtR	-	-	7.0e-40	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	polyubiquitin 2	-	-	0.0	99%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	99%
Blast2go	ethylene biosynthetic process	GO:0009693	Biological Process	99%
Blast2go	protein neddylation	GO:0045116	Biological Process	99%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	99%
Blast2go	intracellular	GO:0005622	Cellular Component	99%
Blast2go	plasma membrane	GO:0005886	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
172		33		66	0.997452
555		14	85		0.993533
557		14		85	0.993533
559	14		85		0.993533
563	60			40	1.0
564		60	40		1.0
566		60	40		1.0
569	40		60		1.0
574	16		50	33	1.0
575	16	66		16	0.988834
576		80		20	0.995493
577	33	66			1.0
578	50	50			1.0
579	16	16	50		0.988986
581	40		40	20	1.0
583	25	75			0.996479

SSRs (tot: 1)

Start position	End position	Sequence	Length
374	386	TCT TCT TCT TCT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain