SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76869

Length: 548 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene76869
CGTCGTGACCTTGGCTGTCACTCAGTTTATCCTCTTACATCCCTGCCATTGGTCGCATATTGTACCCTGCCAGCCATTTGTCTTCTTACAGGGAAGTTTATCCTTCGTGAGCTTGGCGTCTTTCATGTGTTCTTTATGTTATATTTTATTTCCATTTTTACAACTGCTATTCTGGAGCTACGCTGGAGTGGGGTTGGCATTGATGCATGGTGGAGGAATGAGCAATTTTGGGTGATTGGAGGTGTATCGGCACATCTGTTTGCTGTATTTCAGGGGTTACTGAAAGTTCTAGCAGGGATTGACACAAATTTTACTGTCACATCAAAGTCTTCAGATGATGATGGTGACTTTGCAGAACTATATGTTTTCAAGTGGACCAGTCTTCTCATCCCTCCGACTACTTTGATTGTGATAAATATTGTTAGTATAGTAGCAGGTGTTTCCAAAGCTGTTAATGGTAGTTATGAAATGTGGGGTCCCCTGATGGGAAAACTATTATTTGCTTTGTGGGTGATTGTCCATCTCTATCCCTTCCTCAAGGGATTAAT

Ace file of the UniGene sp_v2.0_unigene76869

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase (Fragment) n=1 Tax=Pinus radiata RepID=Q4VWW6_PINRA	-	-	77%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	74%
Blast2go	cellulose synthase catalytic subunit	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cellulose synthase	IPR005150	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 182 - 1096

Fln protein: RRDLGCHSVYPLTSLPLVAYCTLPAICLLTGKFILRELGVFHVFFMLYFISIFTTAILELRWSGVGIDAWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDDDGDFAELYVFKWTSLLIPPTTLIVINIVSIVAGVSKAVNGSYEMWGPLMGKLLFALWVIVHLYPFLKGL

Protein Length: 183

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTATCCTCTTACATCCCTGCCATTGGTCGCATATTGTACCCTGCCAGCCATTTGTCTTCTTACAGGGAAGTTTATCCTTCGTGAGCTTGGCGTCTTTCATGTGTTCTTTATGTTATATTTTATTTCCATTTTTACAACTGCTATTCTGGAGCTACGCTGGAGTGGGGTTGGCATTGATGCATGGTGGAGGAATGAGCAATTTTGGGTGATTGGAGGTGTATCGGCACATCTGTTTGCTGTATTTCAGGGGTTACTGAAAGTTCTAGCAGGGATTGACACAAATTTTACTGTCACATCAAAGTCTTCAGATGATGATGGTGACTTTGCAGAACTATATGTTTTCAAGTGGACCAGTCTTCTCATCCCTCCGACTACTTTGATTGTGATAAATATTGTTAGTATAGTAGCAGGTGTTTCCAAAGCTGTTAATGGTAGTTATGAAATGTGGGGTCCCCTGATGGGAAAACTATTATTTGCTTTGTGGGTGATTGTCCATCTCTATCCCTTCCTCAAGGGATTAAT

Fln Alignment:

AllPineV4_rep_c112846___SVYPLTSLPLVAYCTLPAICLLTGKFILRELGVF-HVFFMLYFISIFTTAILELRWSGVGIDAWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKSSDDDGDFAELYVFKWTSLLIPPTTLIVINIVSIVAGVSKAVNGSYEMWGPLMGKLLFALWVIVHLYPFLKGL
Q4VWW7_______________TVYPITSIPLLAYCTLPAICLLTGKFIIPEISTLASLWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGVDTNFTVTSKASDEGGDFAELYIIKWTALLIPPTTLLIINIVGVVAGISYAISTGYRSWGPLFGKLFFAFWVIVHLYPFLKGL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
164	75		25		0.996477
165		75		25	0.996474
166	75	25			0.996474
170		25	75		0.996474
171	25	75			0.996474
261	85		14		0.993533
267			14	85	0.993533
268	14			85	0.993533
269		14	85		0.993533
274			14	85	0.993533
275	85	14			0.993533
277			14	85	0.993533
282			71	14	0.984337
283		14	85		0.993533
284	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain