SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76823

Length: 1301 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene76823 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	expansin-like protein precursor	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3		IPR014734	-	-
Sma3		IPR005132	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMA2

Fln msg:

Fln protein: MKIFNNPLLFAVWVLSMVSAALSCDRCLHKSKVSSFARANINGACGYGDSATSLTARGGLVMASASAKIYREGVGCGACYQMRCTDPGVCTKSGVKVLVTDFTKSTETDFVLSAGSFSKLAVASKAAQFLKMGTVDIDYKRIPCDYGSQNMTVKVDTSSKYPDYLAVQFLYQGGQTDITAVDIDWVGSSDWQYMTHKNGAIWGMQNPRRGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIGQEGCSPCETGNWTDTRIR*

Protein Length: 274

Fln nts: TGCTATGTAAGAGTAATAAAGTAGTTTGAAATTTCTAAATAATCCACCAACGGATTTGACGGCACGTTTTTCAAATACCCATGTCGGTTTACCGTGTACATCAAGTCGCTGATGTCCACTGCAACAACAGTAGGCAAGCGTTCAAATCCACAGTAAGTGCTTGCGATCTGCTGCAGCTTTCCCAATTACTGCTGTCGGTCATCATTGAACGCGTTTTCCTTGGTTTCTTCCTTCCCTGTTCTGCATTTATAAAAGCTAACAAGCTTCGGCCATCAATCCACACTGATTACTTCTGATTGCCTTTTTGTTCCCCAGAGTCGATCCGCTTCATTTGACGCAGAAATTATTACA_-_ATGAAGATTTTCAATAATCCCCTGCTGTTTGCAGTGTGGGTGCTATCTATGGTTTCCGCAGCATTATCTTGTGACCGCTGCCTTCACAAATCCAAAGTCTCCTCTTTCGCTCGGGCTAATATTAATGGCGCATGTGGATATGGGGACTCTGCAACAAGCTTAACTGCTCGTGGAGGGCTGGTCATGGCAAGCGCAAGTGCCAAAATATACAGAGAAGGCGTAGGATGCGGCGCCTGCTATCAGATGAGATGCACAGATCCAGGCGTTTGCACCAAATCTGGAGTGAAAGTTTTGGTTACAGACTTCACAAAAAGCACTGAGACAGATTTTGTTCTTTCCGCTGGCAGTTTCTCGAAACTGGCGGTAGCTAGCAAAGCTGCTCAATTTCTCAAGATGGGAACTGTGGATATAGACTATAAACGAATCCCCTGTGATTATGGAAGCCAAAACATGACTGTGAAAGTAGACACAAGCAGTAAATATCCAGACTATCTTGCTGTCCAGTTTTTGTATCAAGGAGGCCAAACAGACATTACAGCCGTTGACATTGACTGGGTGGGATCATCAGATTGGCAGTATATGACCCACAAAAACGGTGCAATTTGGGGAATGCAGAATCCTCGCAGAGGTTCCCTGTCGTTTCGGTTATTGGTTACAGGCGGGTACGATGGGAGTTGGGTGTGGCCTACAAGAAATTTACTGCCCGCAATCTGGAGGCCGGGCTCTGTTTATGAATCTGGAGTTCAGATCACAGAAATTGgGCAAGAAGGCTGTAGTCCCTGCGAAACTGGCAACTGGACTGACACACGCATACGTTAA___TTAATTGTGATAATCCACAGTGGAGTAGAGTAATTGTTTGAGGCATAGGACCGAGAGTTATTTCTAATTGGCGAGCATAGTCAAAAAGGCAGTGAGATGTTTATATCTTATATTTTCTCAGATAAATATAT

Fln Alignment:

AllPineV4_rep_c112450___MKIFNN--PLLFAVWVLSMVSAALSCDRCLHKSKVSSFARANINGACGYGDSATSLTARGGLVMASASAKIYREGVGCGACYQMRCTDPGVCTKSGVKVLVTDFTKSTETDFVLSAGSFSKLAVASKAAQFLKMGTVDIDYKRIPCDYGSQNMTVKVDTSSKYPDYLAVQFLYQGGQTDITAVDIDWVGSSDWQYMTHKNGAIWGMQNPRRGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIGQEGCSPCETGNWTDTRI
A9NMA2_______________MKILHKIQQLRFAIWMLFMVSAALSCDRCLHKSKVASDARANINGACGYGTSATSLTTRGGLVTASASAKIYREGVGCGACYQIRCTDPGVCSKSGVKVLVTDFTKNTQTDFVLSARSFSRLAVPSKAAQFLKMGTVDVDYKRIPCEYGGQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITAVEVDQVGSSGWQYMTRNQGAIWGMQNPPRGYLSFRLLVTGGYDGSWVWPRRNLLPSIWTPGSVYESGIQITEIAQEGCSPCETGNWTDTYV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
690		60		40	1.0
696		40		60	1.0
707		20		80	0.995493
806		25		75	0.996473
828	25		75		0.996473
922	83		16		0.994512
937	33		66		1.0
1008	60		40		1.0
1009	50		50		1.0
1010	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain