SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76788

Length: 1561 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene76788 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative alpha-xylosidase n=1 Tax=Pinus pinaster RepID=Q8VWV9_PINPS	-	-	100%
FL-Next	tr=Putative alpha-xylosidase; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	alpha-xylosidase precursor	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		76%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		76%
Blast2go	Metabolic pathways	01100		76%
Blast2go	Alpha-N-arabinofuranosidase.	EC:3.2.1.55	-	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	xyloglucan metabolic process	GO:0010411	Biological Process	76%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	76%
Blast2go	xylan catabolic process	GO:0045493	Biological Process	76%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	76%
Blast2go	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	76%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	76%
Blast2go	apoplast	GO:0048046	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 31	IPR000322	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8VWV9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 398 aas, your sequence is shorter than subject: 311 - 910

Fln protein: MLTMGSLPVLTFICVVCAVWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGKLFPALFSILQCIFTSSS*

Protein Length: 312

Fln nts: CGTCGTGACCTTGGCTGTCACTCA_-_ATGTTGACTATGGGTTCTCTACCAGTACTAACTTTCATTTGTGTAGTCTGTGCTGTGTGGTCTTTGGGACATGGCCAGCAAGTTGGCTATGGCTATCGTCTAGTCTCTGTTGATCAAGGATCCGATGGGAGCTTGATTGGGAGCTTGGAACTCATCCAGCAAACTAATACTTATGGTCCTGACATTCCACATCTTCGGCTCTATGTCAAACATGAAACAGAGGATCGGGTGAGAGTGCATATAACCGATGCACAGACCAAGAGATGGGAAGTTCCACAGGAGTTGCTGTCCAGGGAACAAGCGCCTGCCGATCTGCCGGTAAGCAGTAGGAAGGCCAAACCAGCCAAGTCAGCTTTCGAGTTCTCGAAGTTTGCTGGAGGGGAGTTGATCGTCTCCTTCATTTCCAATCCATTTGGGTTTGCAATAAAGCGCAAATCCAATGGGGATGTGCTCTTCAACTCTTCCTATGGGAACTTGGTCTTCAAAGATCAGTACCTGGAGGTCACCACTGGCCTTCCTGCAACAGCTTCCCTGTATGGATTGGGCGAGAACACGCAGCCCAACGGGATCAAAATTCTTCCCAAAGAAGCTTATACCCTGTACACAACTGACATTTCTGCAATAAATCTGAATACAGATTTGTATGGCTCCCATCCTTTTTACATGGATGTAAGGAACGGAGGAATCTCTCATGGAGTTCTGCTGTTGAACAGCAATGGGATGGACGTTTTCTATACTGGTAATGCATTGACCTACAAGGTCATCGGGGGCGTGCTTGACTTCTACTTCTTTGCAGGGACTTCTCCATTGGATGTCGTTCAGCAGTATACTGCCCTCATTGGCCGCCCAGTTGCCCAGCCCTACTGGGCCTTTGGTAAGTTGTTTCCTGCATTGTTCTCTATATTACAATGCATATTCACATCTAGCTCATAGTGGGAAGTTTTAGTCCTTGTTCTCACATGGATGTCTGTGCCAACTGCCTACACATTTTAGAATATGATGTAAGGGCAGGGGGTAGGGTTTTGGGTTTTGGGCTTTTCGGCATATTGGATTTACAGCAGAAACTTTCACGAGGTTTTCTTGTTGGGAGTTTAATAGAGTTGAAATCTCTTTGCTTTGTTGGATCAACAGAATACTCTGCAGTTACAAGGCTTACTATTTAATTTCAGAAAGCTATAGTTTGTATATTGTAAGAGTATCGCATCTAGCGTATGGTTCTTGGGGTACACTGAACTCTAAATCTCAAGCATATGCAAAACTGAGATTTGGGAGTTGGATTATCACGCTCGTAAACACGTTGTTGCTATATTTGTGCTTTTTTATTTTGGGAAAGAAGCTTCCTGGGAAAATGATTTTATCTCCTGCAACTTCTATACCTTGTTTATTTCCTGCAACTTCTAAGCCTTATTTGGATTTTAGTAAAGTATGATGCTATAAATTTATCTCCTGCAAGTTCTAAATCTGATTTATCTCCTGCAACTTCTATCTCTGATTTATCTCTAAGTCTGATTTGAATTTTAGTAAAGTACGGTTCTAT

Fln Alignment:

AllPineV4_rep_c112162___MLTMGSLPVLTFICVVCAVWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFG
Q8VWV9_______________MLTMGSLPVLTFICVVCAVWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFG

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1076	88		11		0.999937
1083		88	11		0.999937
1084		88		11	0.999937
1085		88	11		0.999937
1087		11		88	0.999937
1090		11	88		0.999937
1091	88	11			0.999937
1096			11	88	0.999937
1098		11	88		0.999937
1100	88	11			0.999937
1156			87	12	0.992554
1157	87		12		0.992554
1163	75			25	1.0
1167	25		75		1.0
1168	75		25		1.0
1169		25		75	1.0
1174		75	25		1.0
1177	25	75			1.0
1179		75	25		1.0
1180	25			75	1.0
1182		75	25		1.0
1276	81		18		0.999994
1527	93		6		0.999264
1528	93			6	0.999264
1530	6			93	0.999264
1531		6		93	0.999264
1534		6		93	0.999264
1535	93	6			0.999264
1536	6	93			0.999364
1537	6			93	0.999364
1564		11		88	1.0
1565		7	88		0.998862
1566	85	14			1.0
1567	7	3	88		0.998862

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain