SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76751

Length: 443 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene76751
CGTCGTGACCTTGGCTGTCACTCACTATTTTATGGGGTGGTTGGTGTGAGCCAGAGAGCCAAGGTTCCATGTTTCCATCCCTGTGAAAACGAATCTGAATCCACCTACTTTAGTTCCTTCTTTTGTCTGGGCTCTGTTCCACATTGTGAAATCTCTGTTTGTGAAGATTTCCAAGAAAATTTGGTGTTCTGGCATAATCTCTTCCTCTTCCTCTTCTGCTCTGTAAACCTAGATTTGTGTCCAAGGATGGAAGAGAAGGTAGGATCGTTTTCAAGTCCGCGAGCATACAGTGTTGCGTTGCTGGACACACCGAGAAGGCTCATGCAGCGCATCGGAGCTGTGACTAGCTGTAAGGAGGAACTAACGCAAGTGAAAGCCTATTCCGGTGCAGAAATGCGGAAGAGCTTGAGGTGGTTCGATCTGGTCGCCCTAGGTATCGGAGG

Ace file of the UniGene sp_v2.0_unigene76751

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cationic amino acid transporter 7 [Arabidopsis thaliana] gb\|AAG51376.1\|AC011560_8 putative amino acid transporter; 33388-30195 [Arabidopsis thaliana] gb\|AAF76365.1\| amino acid transporter, putative [Arabidopsis thaliana] gb\|AEE74933.1\| cationic amino acid	-	-	5.0e-09	49%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	57%
Blast2go	cationic amino acid transporter	-	-	1.60725e-12	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	1.60725e-12	71%
Blast2go	amino acid transmembrane transport	GO:0003333	Biological Process	1.60725e-12	71%
Blast2go	basic amino acid transmembrane transporter activity	GO:0015174	Molecular Function	1.60725e-12	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.60725e-12	71%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A9SGY0

Fln msg: Distance to subject end: 502 aas, your sequence is shorter than subject: 65 - 575

Fln protein: MEEKVGSFSSPRAYSVALLDTPRRLMQRIGAVTSCKEELTQVKAYSGAEMRKSLRWFDLVALGIG

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTATTTTATGGGGTGGTTGGTGTGAGCCAGAGAGCCAAGGTTCCATGTTTCCATCCCTGTGAAAACGAATCTGAATCCACCTACTTTAGTTCCTTCTTTTGTCTGGGCTCTGTTCCACATTGTGAAATCTCTGTTTGTGAAGATTTCCAAGAAAATTTGGTGTTCTGGCATAATCTCTTCCTCTTCCTCTTCTGCTCTGTAAACCTAGATTTGTGTCCAAGG_-_ATGGAAGAGAAGGTAGGATCGTTTTCAAGTCCGCGAGCATACAGTGTTGCGTTGCTGGACACACCGAGAAGGCTCATGCAGCGCATCGGAGCTGTGACTAGCTGTAAGGAGGAACTAACGCAAGTGAAAGCCTATTCCGGTGCAGAAATGCGGAAGAGCTTGAGGTGGTTCGATCTGGTCGCCCTAGGTATCGGAGG

Fln Alignment:

AllPineV4_c112060___SFSSPRAYSVALLDTPRRLMQRIGAVTSCKEELTQVKAYSGAEMRKSLRWFDLVALGIG
A9SGY0_______________SFSSVSEYGYAILDTPGRLCDRALAVSTLTEEMTEVKAMSGAEMTRNLRWWDVIALGVG

SSRs (tot: 1)

Start position	End position	Sequence	Length
199	216	CTCTTC CTCTTC CTCTTC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain