SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76599

Length: 387 nt

UniGene Fasta

>sp_v2.0_unigene76599
CGTCGTGACCTTGGCTGTCACTCAGTTTTCCTCTCTGCAACACCCAACGCCATATCGTCGTGACCTTGGCGTGATCATTCCCTCTGCTGGCCTTCAGGGATGGATTAGCCAACTCGTCCCGCCGTCTTCTGCATTGGGACGAAACCGATTTTTCTTCCCACTGTTCATGGACGGGCGTTTCCTGCTATGAAGATGGAATTACAGTGAGGGCATTGAATCTTTCCGCCTACGGCTTGGAGGGTAAATTGGCGCCTGAGTTAGGAGAGCTGAGGGGCATTGTGTCTCTCGACATGAGCTACAACTCGCTCTCAGGACAAATCCCTCCAGAGCTTTCTAACTGCAGCAGATTGCAGACTCTGTTCTTGAACAACAATCATTTCTCGGGTT

Ace file of the UniGene sp_v2.0_unigene76599

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] sp\|Q9LVP0.1\|Y5639_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At5g63930; Flags: Precursor dbj\|BAA96896.1\| receptor-like protein kinase [Arabidopsis th	-	-	6.0e-17	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	receptor-like protein kinase	-	-	2.51514e-22	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	stomatal complex morphogenesis	GO:0010103	Biological Process	2.51514e-22	61%
Blast2go	embryo sac development	GO:0009553	Biological Process	2.51514e-22	61%
Blast2go	ovule development	GO:0048481	Biological Process	2.51514e-22	61%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.51514e-22	61%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLZ2

Fln msg: Distance to subject end: 386 aas, atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 104 - 514

Fln protein: SFPLLAFRDGLANSSRRLLHWDETDFSSHCSWTGVSCYEDGITVRALNLSAYGLEGKLAPELGELRGIVSLDMSYNSLSGQIPPELSNCSRLQTLFLNNNHFSG

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCCTCTCTGCAACACCCAACGCCATATCGTCGTGACCTTGGCGTGATCATTCCCTCTGCTGGCCTTCAGGGATGGATTAGCCAACTCGTCCCGCCGTCTTCTGCATTGGGACGAAACCGATTTTTCTTCCCACTGTTCATGGACGGGCGTTTCCTGCTATGAAGATGGAATTACAGTGAGGGCATTGAATCTTTCCGCCTACGGCTTGGAGGGTAAATTGGCGCCTGAGTTAGGAGAGCTGAGGGGCATTGTGTCTCTCGACATGAGCTACAACTCGCTCTCAGGACAAATCCCTCCAGAGCTTTCTAACTGCAGCAGATTGCAGACTCTGTTCTTGAACAACAATCATTTCTCGGGTT

Fln Alignment:

AllPineV4_rep_c111782___LLAFRDGLANSSRRLL-HWDETDFSSHCSWTGVSCYEDGITVRALNLSAYGLEGKLAPELGELRGIVSLDMSYNSLSGQIPPELSNCSRLQTLFLNNNHFSG
B8LLZ2_______________LLAFKDAIYDDPNAVLSNWNALD-EQPCNWSGINCSPSGTSVQALNLPRSSLKGFLAPELGLLASLQTLNLRANNILGAIPRELGRLKNLQNLDLAQNQLTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain