SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene76588

Length: 323 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene76588
CGTCGTGACCTTGGCTGTCACTCATTGTTCCTCAAGTTTTGAATGTCCTAGTGTCGCAAGCATAATTAAAAGTTCTGAAAATCTTACAACCAACTCCGGAGAAAATGAACAAGATGAAACATTATCCAAGACATCAAGGGAGGCAACTGAGAAATATTGGTGCTCACTCCATTGTCCAAAATGTCAAGATGAGGGTGTACCAAGTGTGAAAAGGCAGGCAGAAAAATTCATCGCATTGTACTATACAGGGTTAATGATTTGTGATGAAGAAATGTGCAAGCACACAACTAGAAACTTGAACTTGCGGGTTATCGGTGATATGG

Ace file of the UniGene sp_v2.0_unigene76588

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase n=1 Tax=Ricinus communis RepID=B9SC90_RICCO	-	-	4.0e-18	42%
FL-Next	sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	0.0	38%
Blast2go	dna polymerase alpha catalytic subunit	-	-	4.79491e-21	56%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	4.79491e-21	56%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	4.79491e-21	56%
Blast2go	Pyrimidine metabolism	00240	4.79491e-21	56%
Blast2go	Metabolic pathways	01100	4.79491e-21	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	4.79491e-21	56%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	4.79491e-21	56%
Blast2go	lagging strand elongation	GO:0006273	Biological Process	4.79491e-21	56%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	4.79491e-21	56%
Blast2go	DNA primase activity	GO:0003896	Molecular Function	4.79491e-21	56%
Blast2go	nucleus	GO:0005634	Cellular Component	4.79491e-21	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O48653

Fln msg: Distance to subject end: 92 aas, your sequence is shorter than subject: 107 - 1534

Fln protein: VVTLAVTHCSSSFECPSVASIIKSSENLTTNSGENEQDETLSKTSREATEKYWCSLHCPKCQDEGVPSVKRQAEKFIALYYTGLMICDEEMCKHTTRNLNLRVIGDM

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTCCTCAAGTTTTGAATGTCCTAGTGTCGCAAGCATAATTAAAAGTTCTGAAAATCTTACAACCAACTCCGGAGAAAATGAACAAGATGAAACATTATCCAAGACATCAAGGGAGGCAACTGAGAAATATTGGTGCTCACTCCATTGTCCAAAATGTCAAGATGAGGGTGTACCAAGTGTGAAAAGGCAGGCAGAAAAATTCATCGCATTGTACTATACAGGGTTAATGATTTGTGATGAAGAAATGTGCAAGCACACAACTAGAAACTTGAACTTGCGGGTTATCGGTGATATGG

Fln Alignment:

AllPineV4_rep_c111754___LAVTHCSSSFECPSVAS-IIKSSENLTTNSGENEQDETLSKTSREATEKYWCSLHCPKCQDEGVPS----------VKRQAEKFIALYYTGLMICDEEMCKHTTRNLNLRVIGD
O48653_______________LSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGN----------DASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHSVNLRVMGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain