SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75911

Length: 276 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75911
CGTCGTGACCTTGGCTGTCACTCAATATTCCCACCAAACAGTCTGATAGTGTTCTTGCTGCTGTGGACAAAATATTTGAACATCCACCTCCTGATCGAGATGAGATTAACAGGAAGGATCTTACATTTTTGAAGGTCTATGCAATTGATGTAGATGAGGCTGATGAGTTAGATGATGCACTGAGTGCAGCAAAACTACCAGATGGCCGTATAAAAGTTTGGATACATGTTGCTGATCCAACACGTTGGGTGGATTCCAGTAGCATAATTAACAAAG

Ace file of the UniGene sp_v2.0_unigene75911

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribonuclease II-like protein [Arabidopsis thaliana]	-	-	5.0e-09	37%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	52%
Blast2go	uncharacterized ribonuclease sll1290-like	-	-	2.6767e-14	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	2.6767e-14	71%
Blast2go	chloroplast organization	GO:0009658	Biological Process	2.6767e-14	71%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	2.6767e-14	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.6767e-14	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.6767e-14	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease II/R	IPR001900	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RXJ0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 348 aas, your sequence is shorter than subject: 91 - 717

Fln protein: S*PWLSLNIPTKQSDSVLAAVDKIFEHPPPDRDEINRKDLTFLKVYAIDVDEADELDDALSAAKLPDGRIKVWIHVADPTRWVDSSSIINK

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTCCCACCAAACAGTCTGATAGTGTTCTTGCTGCTGTGGACAAAATATTTGAACATCCACCTCCTGATCGAGATGAGATTAACAGGAAGGATCTTACATTTTTGAAGGTCTATGCAATTGATGTAGATGAGGCTGATGAGTTAGATGATGCACTGAGTGCAGCAAAACTACCAGATGGCCGTATAAAAGTTTGGATACATGTTGCTGATCCAACACGTTGGGTGGATTCCAGTAGCATAATTAACAAAG

Fln Alignment:

AllPineV4_rep_c110485___LSLNIPTKQSDSVLAAVDKIFEHPPPDRDEINRKDLTFLKVYXXXXXXXXXXXXXXXXXKLPDGRIKVWIHVADPTRWVDSSSIINK
A9RXJ0_______________LKSGVPIEFSSECVEAAQSVMTNPPLDTNLVNRVDLTHLKVYTIDSEDADEIDDGLSAIRLPDGRIKVWIHVADPTRWVPPMHLLDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain