SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75680

Length: 280 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75680
CGTCGTGACCTTGGCTGTCACTCATGTTTCGTTCTGTTTCGTTATTCTGGGAGTGAAGATACTCTGCATATTGTCTTTCCAGATTGGTCTTTTTGGGGATGGTAAGTGCAACTCCGCTGTCCAAGTTTTCAAGAAGCATAAGAATTTTATTTTCAAGAAGAAACAGAGTATACACAGTTCTGAAAACATAAGCACTCTTGTTCGGCTAGGTTGTTGTTACTGGGTGTATTCATACATCAAAATCAGCCAATATTCACGTTGGATCCCCACTGCTTGTTTT

Ace file of the UniGene sp_v2.0_unigene75680

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9R9B3_RICCO	-	-	7.0e-05	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9F8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 211 aas, your sequence is shorter than subject: 35 - 492

Fln protein: RRDLGCHSCFVLFRYSGSEDTLHIVFPDWSFWGW*

Protein Length: 36

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTCGTTCTGTTTCGTTATTCTGGGAGTGAAGATACTCTGCATATTGTCTTTCCAGATTGGTCTTTTTGGGGATGGTAAGTGCAACTCCGCTGTCCAAGTTTTCAAGAAGCATAAGAATTTTATTTTCAAGAAGAAACAGAGTATACACAGTTCTGAAAACATAAGCACTCTTGTTCGGCTAGGTTGTTGTTACTGGGTGTATTCATACATCAAAATCAGCCAATATTCACGTTGGATCCCCACTGCTTGTTTT

Fln Alignment:

AllPineV4_rep_c110014___LFRYSGSEDTLHIVFPDWSFWGW*VQLRCP
D5A9F8_______________LFRYSGSEDTFDIVFPDWSFWGW-PEIRTP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain