SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75623

Length: 438 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene75623
AGTCGATCATGAAGAATGATGTCTGGGATGTGGTTCCTAGACCCAAGTACAAGTCAGTGGTCATTTCGAAATGGCTCTACAAGATCAAACATGGAGCTGATGGGAGTGTTGAGAAATTCAAGGTCAGGTTTGTAGCTTAAGGCTTCTCTCAAAGGAAGGAGTAGACTATGATGAGATATTTGCACCAGTTGCCCGATATACCACCATCCGTTCGATCATCGCCCTTGCTGCCTCGCAAGGATGGAACCTACATCAAATGAATGTCAAAATTGCTTTCTTGCATGGTTCGCTTAAGGAGGAAGTATATGTGAAACAACCCGAGGGATTCGAGGTTCAAGATCATGAGACACATGTATGCAAGTTGAAGAAAGCCCTTTATGGGAAGCAAGCCCCTAAGGCTTGGTATGAGAGAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene75623 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ	-	-	4.0e-35	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	reverse transcriptase	-	-	3.31718e-37	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3		IPR010256	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	S-adenosyl-l-methionine decarboxylase leader peptide	IPR012511	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Separated hits, possible frame ERROR between 152 and 158, Unexpected STOP codon at 3' end. Distance to subject end: 210 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 138 - 363

Fln protein: MKNDVWDVVPRPKYKSVVISKWLYKIKHGADGSVEKFKVRFVA*GFSxxxGVDYDEIFAPVARYTTIRSIIALAASQGWNLHQMNVKIAFLHGSLKEEVYVKQPEGFEVQDHETHVCKLKKALYGKQAPKAWYERIE*

Protein Length: 139

Fln nts: AGTCGATC_-_ATGAAGAATGATGTCTGGGATGTGGTTCCTAGACCCAAGTACAAGTCAGTGGTCATTTCGAAATGGCTCTACAAGATCAAACATGGAGCTGATGGGAGTGTTGAGAAATTCAAGGTCAGGTTTGTAGCTTAAGGCTTCTCTCAxxxxxxAGGAGTAGACTATGATGAGATATTTGCACCAGTTGCCCGATATACCACCATCCGTTCGATCATCGCCCTTGCTGCCTCGCAAGGATGGAACCTACATCAAATGAATGTCAAAATTGCTTTCTTGCATGGTTCGCTTAAGGAGGAAGTATATGTGAAACAACCCGAGGGATTCGAGGTTCAAGATCATGAGACACATGTATGCAAGTTGAAGAAAGCCCTTTATGGGAAGCAAGCCCCTAAGGCTTGGTATGAGAGAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_rep_c109914___SIMKNDVWDVVPRPKYKSVVISKWLYKIKHGADGSVEKFKVRFVA*GFSQxxGVDYDEIFAPVARYTTIRSIIALAASQGWNLHQMNVKIAFLHGSLKEEVYVKQPEGFEVQDHETHVCKLKKALYG-KQAPKAWYERIE
B8LKV8_______________SIKKNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQxxGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain