SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75613

Length: 262 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75613
CGTCGTGACCTTGGCTGTCACTCGACCCATGGCTTTGTGCCCTTTGCTGTCACTTTGGACAAGGATCTCTATAATACCCCAATGGAATTTGCTGAAGATGTAAGATTGACTTTTGCAAATGCAATGAAATATAATCCTCCTGGCAATGATGTTCATTATATGGCAGTTAATATGAGTCAATTCTTTGAGGGCAAATGGAAAATTATTGAGCAGAAGCTGGCTGGAGAAGAAGTTTATAGAAAATTAACTCAGGATGTTCAGC

Ace file of the UniGene sp_v2.0_unigene75613

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I3M5_POPTR	-	-	2.0e-14	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	global transcription factor group e4	-	-	4.45931e-17	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	4.45931e-17	78%
Blast2go	root development	GO:0048364	Biological Process	4.45931e-17	78%
Blast2go	cell cycle	GO:0007049	Biological Process	4.45931e-17	78%
Blast2go	protein binding	GO:0005515	Molecular Function	4.45931e-17	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bromodomain	IPR001487	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABJ0

Fln msg: Distance to subject end: 146 aas, your sequence is shorter than subject: 87 - 377

Fln protein: RRDLGCHSTHGFVPFAVTLDKDLYNTPMEFAEDVRLTFANAMKYNPPGNDVHYMAVNMSQFFEGKWKIIEQKLAGEEVYRKLTQDVQ

Protein Length: 88

Fln nts: CGTCGTGACCTTGGCTGTCACTCGACCCATGGCTTTGTGCCCTTTGCTGTCACTTTGGACAAGGATCTCTATAATACCCCAATGGAATTTGCTGAAGATGTAAGATTGACTTTTGCAAATGCAATGAAATATAATCCTCCTGGCAATGATGTTCATTATATGGCAGTTAATATGAGTCAATTCTTTGAGGGCAAATGGAAAATTATTGAGCAGAAGCTGGCTGGAGAAGAAGTTTATAGAAAATTAACTCAGGATGTTCAGC

Fln Alignment:

AllPineV4_rep_c109897___YNTPMEFAEDVRLTFANAMKYNPPGNDVHYMAVNMSQFFEGKWKIIEQKLAGEEVYRK
D5ABJ0_______________YKNVCDICEDVRLVFKNAVTYNDDQSDVHVMAKTLSQKFEEKWKTLWPKVNEEEARRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain