SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75473

Length: 358 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75473
CGTCGTGACCTTGGCTGTCACTCACTCTGTCTGCATAGGGAACTTGCCTGCATCACAATACATAGTGCTAGCCTTGAAGAGATCACATAAAAAGTTATTGTGCCTGAAAATCATAATGATCAATAGCCAGAACAACAACCACAACAGCAACAAGCACCTCAAACACCTAAAAGTGGTGTTAGAAGATCTACCAGGATAAGTAAACCCCCTGAATGATACTTTCCTTTATTATATTATGTATTGTTGACTAATTCTGGTGAATCAGAATGTTATGAAGAAGCAATACAGGTAGAAACTAGGAAGAAGTGGGAGAAATCAATGAAAGAAGAGATGGACTCCTTAGCACATAACCTGACTT

Ace file of the UniGene sp_v2.0_unigene75473

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%
Blast2go	hypothetical protein VITISV_040966 [Vitis vinifera]	-	-	1.65721e-14	74%

Source	InterPros	Term	Type	Identity
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C6L3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 471 aas, your sequence is shorter than subject: 119 - 1212

Fln protein: RRDLGCHSLCLHRELACITIHSASLEEIT*KVIVPENHNDQ*PEQQPQQQQAPQTPKSGVRRSTRISKPPE*YFPLLYYVLLTNSGESECYEEAIQVETRKKWEKSMKEEMDSLAHNLT

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTGTCTGCATAGGGAACTTGCCTGCATCACAATACATAGTGCTAGCCTTGAAGAGATCACATAAAAAGTTATTGTGCCTGAAAATCATAATGATCAATAGCCAGAACAACAACCACAACAGCAACAAGCACCTCAAACACCTAAAAGTGGTGTTAGAAGATCTACCAGGATAAGTAAACCCCCTGAATGATACTTTCCTTTATTATATTATGTATTGTTGACTAATTCTGGTGAATCAGAATGTTATGAAGAAGCAATACAGGTAGAAACTAGGAAGAAGTGGGAGAAATCAATGAAAGAAGAGATGGACTCCTTAGCACATAACCTGACTT

Fln Alignment:

AllPineV4_rep_c109627___VRRSTRISKPPE*YFPLLYYVLLTNSGESECYEEAIQVETRKKWEKSMKEEMDSLAHNLT
A5C6L3_______________VRRSSRNTRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLGNQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain