SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75411

Length: 344 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75411
CGTCGTGACCTTGGCTGTCACTCATTTTCGAATTACACCTTTAAATCGAATTGGTGTAATTGGCTACAAGCTCTTGCCAGAGGATCGCGTTGCTGCATTATTTGTTGTTGGACTATCGCTTTCAGATGATGGTGAAAGTGATGAACAAGTTGTTCTTGTGAGCCGTCGTGGCCTTGGCTGTGACTTAGGTTCGAGACATTTCTATCCAGTCGAGAACTGCCAAGGGTGTGAGACTAATGAGACTAGATTATGGTGGCAAGATTCAGTCAGTTTCTGTAGTAGGTCCTTCAGAAATTCACAGCGATGGACCTGAACTGGAAGCAGTTAATCCCTAGTTGCTCTTA

Ace file of the UniGene sp_v2.0_unigene75411

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62	-	-	2.0e-21	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	dna gyrase subunit a	-	-	6.28432e-35	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA topoisomerase activity	GO:0003916	Molecular Function	6.28432e-35	81%
Blast2go	nucleoid	GO:0009295	Cellular Component	6.28432e-35	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	6.28432e-35	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.28432e-35	81%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA gyrase, subunit A	IPR005743	-	-
Sma3	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel	IPR006691	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ8

Fln msg: Separated hits, possible frame ERROR between 175 and 189, your sequence is shorter than subject: 112 - 183

Fln protein: VVTLAVTHFRITPLNRIGVIGYKLLPEDRVAALFVVGLSLSDDGESDEQVVLVSRRGxxxxxxVRDISIQSRTAKGVRLMRLDYGGKIQSVSVVGPSEIHSDGPELEAVNP*

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCGAATTACACCTTTAAATCGAATTGGTGTAATTGGCTACAAGCTCTTGCCAGAGGATCGCGTTGCTGCATTATTTGTTGTTGGACTATCGCTTTCAGATGATGGTGAAAGTGATGAACAAGTTGTTCTTGTGAGCCGTCGTGGCCTxxxxxxxxxxxxxxxGGTTCGAGACATTTCTATCCAGTCGAGAACTGCCAAGGGTGTGAGACTAATGAGACTAGATTATGGTGGCAAGATTCAGTCAGTTTCTGTAGTAGGTCCTTCAGAAATTCACAGCGATGGACCTGAACTGGAAGCAGTTAATCCCTAGTTGCTCTTA

Fln Alignment:

AllPineV4_rep_c109511___VTHFRITPLNRIGVIGYKLLPEDRVAALFVVGLSLSDDGESDEQVVLVSRRGLxxxxxVRDISIQSRTAKGVRLMRLDYGGKIQSVSVVGPSEIHSDGPELEAVNP
D5ABZ8_______________LSSFRITPLKRVGLIGYKLLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMxxxxxVRAISIQSRTAKGVRLMRLEHGGKIQSVSVVGPSEVQSDGPELQAVVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain