SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75291

Length: 350 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75291
CGTCGTGACCTTGGCTGTCACTCAAGAAACGCCATCGCATGGCGCCCTTCCTTTATATTTGTGTGTCTTTGTTTCTGTGTATATACAGCAGAGCTGCCTGCTGAATAGAGAGAATTGTAGTTGAGAGAGGCGATGGTGCAGAAAATGTTTTTGGCGGCGGCTTTATCGCTGCTGCTGCTGTGCGCCGGCATAGCAGGGTTGGTGTTGTTCTATTTGTGGCTCATCTCTTACATTTCGCTGCTGCGGAGTCAGCGGCGCCGCCACCAGTCGGAGGAGAACGACAAGTCTCCCAAGCAGCAGGGCCTCTCGGCGGCCGACCTCCAGCGGCTGCCCACCATCGAATGCCACGA

Ace file of the UniGene sp_v2.0_unigene75291

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P156

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 72 - 186

Fln protein: MVQKMFLAAALSLLLLCAGIAGLVLFYLWLISYISLLRSQRRRHQSEENDKSPKQQGLSAADLQRLPTIECH

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAAACGCCATCGCATGGCGCCCTTCCTTTATATTTGTGTGTCTTTGTTTCTGTGTATATACAGCAGAGCTGCCTGCTGAATAGAGAGAATTGTAGTTGAGAGAGGCG_-_ATGGTGCAGAAAATGTTTTTGGCGGCGGCTTTATCGCTGCTGCTGCTGTGCGCCGGCATAGCAGGGTTGGTGTTGTTCTATTTGTGGCTCATCTCTTACATTTCGCTGCTGCGGAGTCAGCGGCGCCGCCACCAGTCGGAGGAGAACGACAAGTCTCCCAAGCAGCAGGGCCTCTCGGCGGCCGACCTCCAGCGGCTGCCCACCATCGAATGCCACGA

Fln Alignment:

AllPineV4_rep_c109287___YLWLISYIXXXXXXXXXXXXEE-NDKSPKQQGLSAADLQRLPTIEC
A9P156_______________YLWLIWYVSLHEMSNRGRRPSEGNGKAQKQQGLSAADLQRLPTIEC

SSRs (tot: 1)

Start position	End position	Sequence	Length
168	180	GCT GCT GCT GCT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain