SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75140

Length: 337 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene75140
CGTCGTGACCTTGGCTGTCACTCAGATGCTCTGCGTTGGGTGTCTGTCAGTGATGATGAGGTTGATGTGGATGAGCTTGAGAAACGGATGTGGAAGGATCGGGTCAGGCTTCGGCGCTTGAAGGAGCAGCGGAAAGGAAGTGATGTCGTTGATGATGCAAAGCAGAGGCAATCTCAAGAGCAAGCGAGAAGAAAGAAGATGTCAAGGGCACAGGATGGTATTTTGAAGTACATGTTAAAGATGATGGAGGTTTGTAAGGCTCAGGGTTTTGTATATGGTATAATTCCAGAGAAAGGGAAGCCGGTGAGCGGCGCCTCTGATAATCTCAGGGCCTGGT

Ace file of the UniGene sp_v2.0_unigene75140

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-insensitive 3d n=2 Tax=Populus trichocarpa RepID=B9HK87_POPTR	-	-	6.0e-38	88%
FL-Next	sp=Protein ETHYLENE INSENSITIVE 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%
Blast2go	protein ethylene insensitive 3-like	-	-	4.2039e-45	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to iron ion	GO:0071281	Biological Process	4.2039e-45	92%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	4.2039e-45	92%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	4.2039e-45	92%
Blast2go	ethylene mediated signaling pathway	GO:0009873	Biological Process	4.2039e-45	92%
Blast2go	DNA binding	GO:0003677	Molecular Function	4.2039e-45	92%
Blast2go	protein binding	GO:0005515	Molecular Function	4.2039e-45	92%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	4.2039e-45	92%
Blast2go	nucleus	GO:0005634	Cellular Component	4.2039e-45	92%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease A	IPR001427	-	-
Sma3	Sodium/solute symporter	IPR001734	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Ethylene insensitive 3	IPR006957	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24606

Fln msg: Distance to subject end: 491 aas, your sequence is shorter than subject: 112 - 628

Fln protein: RRDLGCHSDALRWVSVSDDEVDVDELEKRMWKDRVRLRRLKEQRKGSDVVDDAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAW

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGCTCTGCGTTGGGTGTCTGTCAGTGATGATGAGGTTGATGTGGATGAGCTTGAGAAACGGATGTGGAAGGATCGGGTCAGGCTTCGGCGCTTGAAGGAGCAGCGGAAAGGAAGTGATGTCGTTGATGATGCAAAGCAGAGGCAATCTCAAGAGCAAGCGAGAAGAAAGAAGATGTCAAGGGCACAGGATGGTATTTTGAAGTACATGTTAAAGATGATGGAGGTTTGTAAGGCTCAGGGTTTTGTATATGGTATAATTCCAGAGAAAGGGAAGCCGGTGAGCGGCGCCTCTGATAATCTCAGGGCCTGGT

Fln Alignment:

AllPineV4_rep_c109003___LEKRMWKDRVRLRRLKEQRKGSDVVDDAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAW
O24606_______________LERRMWRDKMRLKRLKEQDKGKEGVDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPENGKPVTGASDNLREW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain