SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75108

Length: 300 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene75108
AAACGATGAGGCTGGCCATTTCACCTTTGGCAGTATTCTCAGTGTGTGTGCAGGGATGGAGGCTCTGGAACAGGGACAACAGGTTCATTCCCTTATTATCAAATCTGCTTACGAGTCTAATGTGTTGTTGGTAGTGCCATTGTCGATATGTATGCTAAATGTGGTAGTGTAAATGATGCTCGCTACTTCTTTGAGATAATGCCTGAAAGGAATGTTGTCTCATGGACTGCAGTGATCTCTGGTCATGCTCAACGGGGGCAGAGTGAGGAGGCCTTTGAAAGTCTTCTACCAATTGCTAAC

Ace file of the UniGene sp_v2.0_unigene75108 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	pentatricopeptide repeat-containing protein	-	-	9.50721e-17	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 326 aas, your sequence is shorter than subject: 100 - 795

Fln protein: NDEAGHFTFGSILSVCAGMEALEQGQQVHSLIIKSAYESNxxxxxAIVDMYAKCGSVNDARYFFEIMPERNVVSWTAVISGHAQRGQSEEAFESLLPIAN

Protein Length: 101

Fln nts: AAACGATGAGGCTGGCCATTTCACCTTTGGCAGTATTCTCAGTGTGTGTGCAGGGATGGAGGCTCTGGAACAGGGACAACAGGTTCATTCCCTTATTATCAAATCTGCTTACGAGTCTAATxxxxxxxxxxxxxxxGCCATTGTCGATATGTATGCTAAATGTGGTAGTGTAAATGATGCTCGCTACTTCTTTGAGATAATGCCTGAAAGGAATGTTGTCTCATGGACTGCAGTGATCTCTGGTCATGCTCAACGGGGGCAGAGTGAGGAGGCCTTTGAAAGTCTTCTACCAATTGCTAAC

Fln Alignment:

AllPineV4_rep_c108954___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
B8LQA8_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain