SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75093

Length: 269 nt

UniGene Fasta

>sp_v2.0_unigene75093
CGTCGTGACCTTGGCTGTCACTCATCTTAGTGCGTGTGCAAGTCTTGCAGTCATGGAACAGGGTAAGTGGGTACATGCACATATCATAAAAACAGGGTGCAAGTTGGATGTATTTGTTGGGAACGCCCTGGTTGATATGTATGGGAAATGTGGATGCATAGATGATGCACGCCAAGTTTTTGATAGATTGACTAGACGAGATGTGGTTTCATGGAATGCTATGATCACAGTATGTGCCCAGCACGGGCATGGCGAGGAAGCTGTTCGGC

Ace file of the UniGene sp_v2.0_unigene75093

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide, putative [Oryza sativa Japonica Group]	-	-	3.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.08558e-30	76%

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 285 aas, your sequence is shorter than subject: 72 - 370

Fln protein: MEQGKWVHAHIIKTGCKLDVFVGNALVDMYGKCGCIDDARQVFDRLTRRDVVSWNAMITVCAQHGHGEEAVR

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTAGTGCGTGTGCAAGTCTTGCAGTC_-_ATGGAACAGGGTAAGTGGGTACATGCACATATCATAAAAACAGGGTGCAAGTTGGATGTATTTGTTGGGAACGCCCTGGTTGATATGTATGGGAAATGTGGATGCATAGATGATGCACGCCAAGTTTTTGATAGATTGACTAGACGAGATGTGGTTTCATGGAATGCTATGATCACAGTATGTGCCCAGCACGGGCATGGCGAGGAAGCTGTTCGGC

Fln Alignment:

AllPineV4_rep_c108910___LSACASLAVMEQGKWVHAHIIKTGCKLDVFVGNALVDMYGKCGCIDDARQVFDRLTRRDVVSWNAMITVCAQHGHGEEAV
A9P0W0_______________LRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain