SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene75085

Length: 329 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene75085
ATACCAGCCAACTTTGGCTACTGATCTTGGAGGTTTGCAAGAACGTATTACAACAACCAAGAAGGGTTCCATTACTTCCGTGCAAGCTATATATGTGCCAGCTGATGATTTGACAGATCCAGCACCTGCATGTAATAGGTTTAACAGCACATAAAGCATCTAATCGGAAACCAGCTATAAGGGGACCCATTGGAGGTACATATTGTTCCAATACTCGGTCGCCCATCCCAGATCGCCTCTGGCTCAAGCACGCTTAATTGTGGAGTTTTCCCCACAACCAAACCCACTTAGCTTGCTACCCCATTTGCAAAACCTTAGCGTGTATTGTG

Ace file of the UniGene sp_v2.0_unigene75085 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase subunit beta n=1 Tax=Selaginella moellendorffii RepID=D8R809_SELML	-	-	2.0e-16	100%
FL-Next	sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	atp synthase beta subunit	-	-	5.5794e-20	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	5.5794e-20	99%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	5.5794e-20	99%
Blast2go	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	5.5794e-20	99%
Blast2go	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	GO:0000275	Cellular Component	5.5794e-20	99%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	-
Sma3	ATPase, F1 complex, beta subunit	IPR005722	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 92 aas, your sequence is shorter than subject: 51 - 568

Fln protein: YQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPACNRFNST*

Protein Length: 52

Fln nts: ATACCAGCCAACTTTGGCTACTGATCTTGGAGGTTTGCAAGAACGTATTACAACAACCAAGAAGGGTTCCATTACTTCCGTGCAAGCTATATATGTGCCAGCTGATGATTTGACAGATCCAGCACCTGCATGTAATAGGTTTAACAGCACATAAAGCATCTAATCGGAAACCAGCTATAAGGGGACCCATTGGAGGTACATATTGTTCCAATACTCGGTCGCCCATCCCAGATCGCCTCTGGCTCAAGCACGCTTAATTGTGGAGTTTTCCCCACAACCAAACCCACTTAGCTTGCTACCCCATTTGCAAAACCTTAGCGTGTATTGTG

Fln Alignment:

AllPineV4_rep_c108889___YQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPA
A9NUR7_______________YQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain