SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74939

Length: 369 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene74939
CCGATTCCGATCGCAAGTTACGTCAAAGGAGCACCTCTGCATCACTTTTACGAGAGCATTGGCATAGGGCCCGATTTTGAAGCCATAGAAGAGTTCAGCGATCTCATGTGGCCTCACGGAAACCAAAACTTCTGCGAAGTCATGCGAGAGTATTTCGAGAGGATGAAGGACTTGTCTGACGGAATACACAAGATTATTCTGGGCACTTTGGGAGTGAGCAATTACTACGCTTCACACTTCGAGCACTGTAAGCTTTGGCTCCGCATGAATAATTACGAAGTATCATCTGACGAAGCCTCCGGGTCGATTACTTTTCCGGCTCACACAGATGGAACTAGCATAACCATACTGCGTGAAGATGAGGTGGGC

Ace file of the UniGene sp_v2.0_unigene74939

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate-dependent dioxygenase n=1 Tax=Populus trichocarpa RepID=B9H9Q6_POPTR	-	-	7.0e-15	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	2-oxoglutarate-dependent dioxygenase	-	-	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW35

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 123 - 350

Fln protein: PIPIASYVKGAPLHHFYESIGIGPDFEAIEEFSDLMWPHGNQNFCEVMREYFERMKDLSDGIHKIILGTLGVSNYYASHFEHCKLWLRMNNYEVSSDEASGSITFPAHTDGTSITILREDEVG

Protein Length: 124

Fln nts: CCGATTCCGATCGCAAGTTACGTCAAAGGAGCACCTCTGCATCACTTTTACGAGAGCATTGGCATAGGGCCCGATTTTGAAGCCATAGAAGAGTTCAGCGATCTCATGTGGCCTCACGGAAACCAAAACTTCTGCGAAGTCATGCGAGAGTATTTCGAGAGGATGAAGGACTTGTCTGACGGAATACACAAGATTATTCTGGGCACTTTGGGAGTGAGCAATTACTACGCTTCACACTTCGAGCACTGTAAGCTTTGGCTCCGCATGAATAATTACGAAGTATCATCTGACGAAGCCTCCGGGTCGATTACTTTTCCGGCTCACACAGATGGAACTAGCATAACCATACTGCGTGAAGATGAGGTGGGC

Fln Alignment:

AllPineV4_rep_c108608___IPIASYVKGAPLHHFYESIGIGPDFEAIEEFSDLMWPHGNQNFCEVMREYFERMKDLSDGIHKIILGTLGVSNYYASHFEHCKLWLRMNNYEVSSDEASGSITFPAHTDGTSITILREDEVG
A9NW35_______________VPYGGYIQGGSAAPFYESLGIGPHFEAIHEFSDLMWPHGNENFCQVMREYLEKKKELCDRIHKIILASLGVSNYYASHFEHCKLWFRMNEYQVSCDESSGLISLPAHTDGGSIAILHEDEVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain