SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74931

Length: 457 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74931
CTACAATGGTGAAGTTTGCATGCTATGAGAGTGCTGTAGAGAATATATACAGATTTGCCCTCCCAATTCCAAGAGAGGATTGCCCAAAGGCTTGGCAGTTAGGAGTAAGCTTTGCAGCTGGCTATATTGCAGGGATATCTTGTGCTGTGGTCTCGCATCCTGCAGATAACTTGGTCTCTGTTCTCAATAATTGCAATCAAGAAGTTGGGTGTGGTTGCATTGCTGACTAGAGGTTTGCTATTAAGGATTCTGATGGTGGGCACACTAACGGGAGCTCAGCATGGAATATACGATGGCTTTAAGGTTTTCGCTGGAATGCCCACTCGTGGACCGCCAGCGGCGATGCTGAGAAAATCATCTCAGCAGGGGCTGAAGAGAGTGACTGATACCCTGTGCGTGCTGCTATCTCGGGACTGTCTGAAAAATGGCTGCCATGGGTGCGACCAGGGCTTGTTGT

Ace file of the UniGene sp_v2.0_unigene74931 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial phosphate transporter n=1 Tax=Paeonia suffruticosa RepID=A8TU59_PAESU	-	-	3.0e-27	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	mitochondrial phosphate transporter	-	-	4.21791e-43	84%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQZ5

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 27 aas, your sequence is shorter than subject: 152 - 304

Fln protein: TMVKFACYESAVENIYRFALPIPREDCPKAWQLGVSFAAGYIAGISCAVVSHPADNLVSVLNNxxxKKLGVVALLTRGLLLRILMVGTLTGAQHGIYDGFKVFAGMPTRGPPAAMLRKSSQQGLKRVTDTLCVLLSRDCLKNGCHGCDQGLL

Protein Length: 153

Fln nts: CTACAATGGTGAAGTTTGCATGCTATGAGAGTGCTGTAGAGAATATATACAGATTTGCCCTCCCAATTCCAAGAGAGGATTGCCCAAAGGCTTGGCAGTTAGGAGTAAGCTTTGCAGCTGGCTATATTGCAGGGATATCTTGTGCTGTGGTCTCGCATCCTGCAGATAACTTGGTCTCTGTTCTCAATAATxxxxxxxxxAAGAAGTTGGGTGTGGTTGCATTGCTGACTAGAGGTTTGCTATTAAGGATTCTGATGGTGGGCACACTAACGGGAGCTCAGCATGGAATATACGATGGCTTTAAGGTTTTCGCTGGAATGCCCACTCGTGGACCGCCAGCGGCGATGCTGAGAAAATCATCTCAGCAGGGGCTGAAGAGAGTGACTGATACCCTGTGCGTGCTGCTATCTCGGGACTGTCTGAAAAATGGCTGCCATGGGTGCGACCAGGGCTTGTTGT

Fln Alignment:

AllPineV4_rep_c108597___TMVKFACYESAVENIYRFALPIPREDCPKAWQLGVSFAAGYIAGISCAVVSHPADNLVSVLNNCNxxxxxxAIKKXXXXXXXXXXXXXXXLMVGTLTGAQHGIYDGFKVFAGMPTRGPPAAMLRKSSQQ
A9NQZ5_______________TMVKFASYESVVENIYKYALPIPREDCPQAWQLGVSFAAGYIAGISCAVVSHPADNLISLLNNCNxxxxxxAIKKLGVVALFTRGLPLRILMVGTLTGAQHGIYDAFKVFTGMPTAGPPTVMLRRSSQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain