SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74877

Length: 260 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene74877
GTGAAGTTCAAGCAACAGATGCCTCTGAGATAGGCATTGATAACATCAGAGACAAAGCACGCTAGATAGCTTATGCTTTGATGTTTGCATTATAGGTTGTGTGGATCTGAATTATGATTTTCTGCTTGGTTGTCTGATCAATTCTTGATAGGTTCATTGTACTGTGACCGTTGGTTATATAAGTGTTCATGATTTATGTAACCAACGGTCACAGTACAATGAACCTATCAAGAATTGATCAGACAACCAGCAGAAATCAT

Ace file of the UniGene sp_v2.0_unigene74877

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-binding, cofilin/tropomyosin type	IPR002108	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLP6

Fln msg: Overlapping hits, possible frame ERROR between 53 and 50, your sequence is shorter than subject: 49 - 166

Fln protein: EVQATDASEIGIDNIxxxSTLDSLCFDVCIIGCVDLNYDFLLGCLINS*

Protein Length: 50

Fln nts: GTGAAGTTCAAGCAACAGATGCCTCTGAGATAGGCATTGATAACATCxxxxxxxxxAGCACGCTAGATAGCTTATGCTTTGATGTTTGCATTATAGGTTGTGTGGATCTGAATTATGATTTTCTGCTTGGTTGTCTGATCAATTCTTGATAGGTTCATTGTACTGTGACCGTTGGTTATATAAGTGTTCATGATTTATGTAACCAACGGTCACAGTACAATGAACCTATCAAGAATTGATCAGACAACCAGCAGAAATCAT

Fln Alignment:

AllPineV4_rep_c108491___EVQATDASEIGIDNIxxSTLDSLCFDVCIIGCVDLNYDFLLGCLINS
A9NLP6_______________EVQATDASEIGIDNIxxSTLDCICFVVCIIGCVDLNYDFLLGYLINS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain