SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74860

Length: 360 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74860
AAGGAATCCATGAAACTATTCACTCTTATATTACATGGCTAATCACCTGACATGAGTGTAGGCATGGTATAGAAGCCTCCAAAGCACTACACAAACTCTCTGCACCTTCCATCACTATGACAAAGCCACAACAAGTTGTTGAGTGGAGGCTGATACACAGCGCTTTGCTCCAAAGGATAGGCAGAGGCACAATGAGATGTAGTGAAATGAAATGCTTAAATTTAGAAACAACCACAGCAAAAATCACCACCCAAAGCTTTGATGGTTCTCCGACACTTTGAAGCAAGATCTACACTACTGGCCTACATGGGAACTGACCTTTGACCCTGAGACTGCAGCATGGTCAAAGGTCAGTTCCCA

Ace file of the UniGene sp_v2.0_unigene74860 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protease Do-like 7 [Arabidopsis thaliana] sp\|Q8RY22.1\|DEGP7_ARATH RecName: Full=Protease Do-like 7 gb\|AAL84951.1\| AT3g03380/T21P5_20 [Arabidopsis thaliana] gb\|AAO11643.1\| At3g03380/T21P5_20 [Arabidopsis thaliana] gb\|AEE73938.1\| protease Do-like 7 [Arabido	-	-	2.0e-06	84%
FL-Next	sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	PDZ domain	IPR001478	-	0.0	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8RY22

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 119 - 1097

Fln protein: RNP*NYSLLYYMANHLT*V*AWYRSLQSTTQTLCTFHHYDKATTSC*VEADTQRFAPKDRQRHNEM**NEMLKFRNNHSKNHHPKL*WFSDTLKQDLHYWPTWELTFDPETAAWSKVSS

Protein Length: 120

Fln nts: AAGGAATCCATGAAACTATTCACTCTTATATTACATGGCTAATCACCTGACATGAGTGTAGGCATGGTATAGAAGCCTCCAAAGCACTACACAAACTCTCTGCACCTTCCATCACTATGACAAAGCCACAACAAGTTGTTGAGTGGAGGCTGATACACAGCGCTTTGCTCCAAAGGATAGGCAGAGGCACAATGAGATGTAGTGAAATGAAATGCTTAAATTTAGAAACAACCACAGCAAAAATCACCACCCAAAGCTTTGATGGTTCTCCGACACTTTGAAGCAAGATCTACACTACTGGCCTACATGGGAACTGACCTTTGACCCTGAGACTGCAGCATGGTCAAAGGTCAGTTCCCA

Fln Alignment:

AllPineV4_rep_c108455___TLKQDLHYWPTWELTFDPETAAWSK
Q8RY22_______________TLKQDLHYWPTWELRFDPETALWRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain