SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74772

Length: 246 nt

UniGene Fasta

>sp_v2.0_unigene74772
GCATGGTTGACCTTCTTGGCCGAGCTGGGCATTTGTACGAAGCACAACACTTCATAAACAACATGCCAATAAAACCCGATGCTACTGTGTGGAGTTGTTTACTTGGTGCCTGTAGAATGCATAACAATTTAGAGATAGGAGAATATGTGGCAGACCGTATTTTTGAGTTAGACTCTAAAAATTCTGCACCTTATCTGCTCCTTTTAGGAATCTATGCTGCAGCTGGTAGGTGGGATAGCATTAAAA

Ace file of the UniGene sp_v2.0_unigene74772

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	pentatricopeptide repeat-containing protein at4g33990-like	-	-	6.51929e-23	75%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 81 - 312

Fln protein: MVDLLGRAGHLYEAQHFINNMPIKPDATVWSCLLGACRMHNNLEIGEYVADRIFELDSKNSAPYLLLLGIYAAAGRWDSIK

Protein Length: 82

Fln nts: GCATGGTTGACCTTCTTGGCCGAGCTGGGCATTTGTACGAAGCACAACACTTCATAAACAACATGCCAATAAAACCCGATGCTACTGTGTGGAGTTGTTTACTTGGTGCCTGTAGAATGCATAACAATTTAGAGATAGGAGAATATGTGGCAGACCGTATTTTTGAGTTAGACTCTAAAAATTCTGCACCTTATCTGCTCCTTTTAGGAATCTATGCTGCAGCTGGTAGGTGGGATAGCATTAAAA

Fln Alignment:

AllPineV4_rep_c108272___MVDLLGRAGHLYEAQHFINNMPIKPDATVWSCLLGACRMHNNLEIGEYVADRIFELDSKNSXXXXXXXXXXXXXXRWDSI
D5ADG9_______________MVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain