SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74770

Length: 344 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene74770
TCTGAACGGGCCAAGATATTGGATAGAGGAGGTCGAATTTGCTGGGAAATTGAAACTCAGCTTAGAGGGTTGTGCAGGGGGCCATACGTCCTAGGTGATGGAGTTATTGTTCCAGTGTGCAGGCGTACAGGGCTAGGAGAGAGGTCGAACTGTAGGCCAGAGAGGCCAATTTTTCCAAGTGGTTTGGTGATGCTGAAAAGCTGACAAAGGCCCTTTTCTCATTTGCAAGCAGGCTAGCTCCAGTTATCATATTCATTGATGAGCATTCTGGGGCTCGTGGTGGTGCTTCTGAACATGAAGCAACAAGAAGAATGCGAAATGAATTTATGGCAGCTTGGGATGGC

Ace file of the UniGene sp_v2.0_unigene74770

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein MSP1, putative n=1 Tax=Ricinus communis RepID=B9T1I4_RICCO	-	-	3.0e-21	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	p-loop containing ntpase domain-containing protein	-	-	1.64526e-25	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	1.64526e-25	88%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	1.64526e-25	88%
Blast2go	Thiamine metabolism	00730	1.64526e-25	88%
Blast2go	Metabolic pathways	01100	1.64526e-25	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	1.64526e-25	88%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 174 aas, your sequence is shorter than subject: 114 - 388

Fln protein: *TGQDIG*RRSNLLGN*NSA*RVVQGAIRPR*WSYCSSVQAYRARREVEL*AREANFSKWFGDAEKLTKALFSFASRLAPVIIFIDEHSGARGGASEHEATRRMRNEFKAAWDG

Protein Length: 115

Fln nts: TCTGAACGGGCCAAGATATTGGATAGAGGAGGTCGAATTTGCTGGGAAATTGAAACTCAGCTTAGAGGGTTGTGCAGGGGGCCATACGTCCTAGGTGATGGAGTTATTGTTCCAGTGTGCAGGCGTACAGGGCTAGGAGAGAGGTCGAACTGTAGGCCAGAGAGGCCAATTTTTCCAAGTGGTTTGGTGATGCTGAAAAGCTGACAAAGGCCCTTTTCTCATTTGCAAGCAGGCTAGCTCCAGTTATCATATTCATTGATGAGCATTCTGGGGCTCGTGGTGGTGCTTCTGAACATGAAGCAACAAGAAGAATGCGAAATGAATTTAaGGCAGCTTGGGATGGC

Fln Alignment:

AllPineV4_rep_c108266___SKWFGDAEKLTKALFSFASRLAPVIIFIDEHSGARG--GASEHEATRRMRNEFKAAWDG
D5AE60_______________SKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQRRSSEQEAFTNMKTEFMALWDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain