SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74676

Length: 276 nt

UniGene Fasta

>sp_v2.0_unigene74676
GGGATGCAGCTAGCGCCATTCCCAGACTCGGAATTCCAAAGTATGAATGGTGGTCTGAAGCTTTACATGGGGTGTCTAATGTAGGTCCCGGGACACGGTTCGCAGCACCAGTTCGTGGTGCTCTTGGTTTTCCTCAAGTCATTCTTACGGCTGCTTCCTTCAATGAGACTCTGTGGGAAACCATTGGTCAGGTGGTATCGACAGAGGCACGGGGCATGTATAACGTGGGGTTGGCAGGGCTGACGTTCTGGAGTCCCAACGTGAATCTATTCTCTG

Ace file of the UniGene sp_v2.0_unigene74676

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG1472 Beta-glucosidase-related glycosidases	-	-	1.0e-17	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	protein	-	-	1.80717e-40	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	1.80717e-40	85%

Source	KEGGs	Term	e value	Identity
Blast2go	Starch and sucrose metabolism	00500	1.80717e-40	85%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	1.80717e-40	85%
Blast2go	Metabolic pathways	01100	1.80717e-40	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	1.80717e-40	85%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	1.80717e-40	85%
Blast2go	cell wall	GO:0005618	Cellular Component	1.80717e-40	85%
Blast2go	apoplast	GO:0048046	Cellular Component	1.80717e-40	85%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNI8

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 91 - 151

Fln protein: DAASAIPRLGIPKYEWWSEALHGVSNVGPGTRFAAPVRGALGFPQVILTAASFNETLWETIGQVVSTEARGMYNVGLAGLTFWSPNVNLFS

Protein Length: 92

Fln nts: GGGATGCAGCTAGCGCCATTCCCAGACTCGGAATTCCAAAGTATGAATGGTGGTCTGAAGCTTTACATGGGGTGTCTAATGTAGGTCCCGGGACACGGTTCGCAGCACCAGTTCGTGGTGCTCTTGGTTTTCCTCAAGTCATTCTTACGGCTGCTTCCTTCAATGAGACTCTGTGGGAAACCATTGGTCAGGTGGTATCGACAGAGGCACGGGGCATGTATAACGTGGGGTTGGCAGGGCTGACGTTCTGGAGTCCCAACGTGAATCTATTCTCTG

Fln Alignment:

AllPineV4_c108000___DAASAIPRLGIPKYEWWSEALHGVSNVGPGTRFAAPVRGALGFPQVILTAASFNETLWETIGQV
B8LNI8_______________NGASNISRLGIPMYEWWSEALHGVSDVGPGTRFGAPVPGATSFPQVILTAASFNDTLWEAIGRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain