SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74649

Length: 820 nt

Origin of reads: Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene74649

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	3.0e-29	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	tir-nbs-lrr protein	-	-	3.61853e-37	60%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW11

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 273 - 495

Fln protein: RDVGRYAAASSSPCRLWRWTDNLIDDLMLQSCNGQVIVRGIRMVLGEYEDDEFESIQMRRLQLVDAEGPLSERILKRVKSPNLIWLRWKKCPYSSLPSWIPLNKLKVLQVSDSTLETLWQQESQLPVLLEELLIHDCMQLKSIRGLLQLTKLQRLSVSGCSELEELPTVETPVSLEELQTDMCLKLKSIPGFAQWMNLRHLNVSGCVKLKELPSMETLVSLEELRASNCFKLQNLRGLELATKLQLLDVRYCFELKDLPSMETLVSLEELWAH

Protein Length: 274

Fln nts: AAGAGACGTAGGAAGATATGCTGCCGCATCCTCATCGCCGTGTCGTCTTTGGCGTTGGACAGACAACCTCATTGATGATTTGATGCTGCAGTCATGTAATGGACAGGTAATCGTGCGGGGAATTAGAATGGTTCTTGGTGAATATGAAGATGATGAATTTGAAAGTATTCAGATGAGACGATTACAACTTGTTGATGCTGAAGGTCCTCTCTCCGAACGCATTCTAAAGAGGGTGAAGTCCCCAAATCTCATTTGGCTCCGCTGGAAAAAATGTCCATATTCTTCCCTGCCTTCGTGGATTCCACTGAATAAATTAAAGGTTCTTCAGGTGTCCGACAGCACATTAGAAACATTGTGGCAACAGGAATCACAGCTGCCCGTACTTTTGGAGGAGTTGCTGATACATGACTGTATGCAACTGAAGAGCATACGGGGGTTGCTCCAACTGACAAAGCTTCAACGACTATCAGTTTCAGGTTGCTCTGAGTTAGAGGAGCTGCCAACTGTTGAAACACCGGTATCTTTAGAGGAGTTGCAGACAGACATGTGTCTGAAGTTGAAAAGTATACCGGGGTTTGCACAATGGATGAATCTTCGACACTTAAATGTTAGTGGTTGCGTTAAGTTAAAAGAGTTGCCTAGTATGGAAACACTGGTATCTTTGGAGGAGTTGCGGGCATCCAACTGTTTTAAACTGCAGAACCTCAGAGGGTTGGAGCTTGCCACAAAGCTTCAACTGTTAGATGTTCGTTACTGCTTTGAGTTAAAAGATCTGCCAAGCATGGAAACATTGGTATCTCTGGAGGAGTTGTGGGCACAC

Fln Alignment:

AllPineV4_rep_c107950___RDVGRYAAASSSPCRLWRWTDNLIDDLMLQSCNGQV-IVRGIRMVLGEYEDDEFES------------IQMRRLQLVDAEGPLSERILKRVKSPNLIWLRWKKCPYSSLPSWIPLNKLKVLQVSDSTLETLWQQES----QLPVLLEELLIHDCMQLKSI-RGLLQLTKLQRLSV----SGCSELEELPTVETPV-SLEELQTDMCLKLKSIP-GFAQWMNLRHLNVSGCVKLKELP-SMETLVSLEELRASNCFKLQNL-RGLELATKLQLLDVRYCFELKDLPSMETLVSLEELW
A9NW11_______________RDFGKAVADASLPRRLLYST--AIKDMLEQLSNEQVSTVRGIRVVLGDYYDDVYASGGMDTLFDALDGIDRRTLELVDTDENAILACILRKPVPSLIWLRWNKCPNLSLPWWIPMGRLRVLQVYGSELKTLWEDESQVPWQVPLQLRELEIN--APLSNIPKSIGWLEHLERIVVAGFLSGHVHLTKLPKEFCRLRSLRDLVLTECSKMKSLPDSFCHLWNLQHIDLSFCCNLERLPDSIGRLQGLRHINLSYCHDLERLPDSIGRLRGLQHIDLRGCHNLESLPD-----SFGELW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain