SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74607

Length: 343 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74607
AAACCCATATGTTGATAAGTATTGGGAGCCCAGCAACCATTCATATGACTGGAGAGGAATAATTGGTTGCATTGGAGGCTTCAACTGCAACTTGGAAAATAGTAATTGGTCATCATGCTATTAGGAGCGTGGGTTCACATGGAGACACAGAGGAACTGGTTCAGCAGCTATTGCCTATTATTGAAGCTCATGGTGTGGACCTGTATATGAATGGGCATGACCACTGTCTGGAGCATATTAGCAGCGTTAGCAGCCCTTTACAGTTTTTGACAAGTGGAGGGGGTTCGAAAGCTTGGAGGGGAATGAAAGAAGGGGCTAACATGGAGGGTTTGCAGTTCTTTCA

Ace file of the UniGene sp_v2.0_unigene74607 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative acid phosphatase [Lupinus luteus]	-	-	1.0e-33	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	purple acid phosphatase	-	-	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZW8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 40 aas, your sequence is shorter than subject: 113 - 350

Fln protein: THMLISIGSPATIHMTGEE*LVALEASTATWKIVIGHHAIRSVGSHGDTEELVQQLLPIIEAHGVDLYMNGHDHCLEHISSVSSPLQFLTSGGGSKAWRGMKEGANMEGLQFF

Protein Length: 114

Fln nts: AAACCCATATGTTGATAAGTATTGGGAGCCCAGCAACCATTCATATGACTGGAGAGGAATAATTGGTTGCATTGGAGGCTTCAACTGCAACTTGGAAAATAGTAATTGGTCATCATGCTATTAGGAGCGTGGGTTCACATGGAGACACAGAGGAACTGGTTCAGCAGCTATTGCCTATTATTGAAGCTCATGGTGTGGACCTGTATATGAATGGGCATGACCACTGTCTGGAGCATATTAGCAGCGTTAGCAGCCCTTTACAGTTTTTGACAAGTGGAGGGGGTTCGAAAGCTTGGAGGGGAATGAAAGAAGGGGCTAACATGGAGGGTTTGCAGTTCTTTCA

Fln Alignment:

AllPineV4_rep_c107863___VALEASTATWKIVIGHHAIRSVGSHGDTEELVQQLLPIIEAHGVDLYMNGHDHCLEHISSVSSPLQFLTSGGGSKAWRGMKEGANMEGLQFF
A9NZW8_______________VALETSTATWKIVIGHHTIRSVGSHGDTEEMIHQILPIIEAYGVDLYVNGHDHCLEHISSVNSPLQFLTSGGGSKAWRGMKEGANMEGLQFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain