SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74559

Length: 420 nt

UniGene Fasta

>sp_v2.0_unigene74559
CGTCGTGACCTTGGCTGTCACTCATAGTACTAAATCACTCTCAGGCCCTTCCTTTTGGATCAAACTAAGAGTACTTGATCTTTTCTGTCTTGCTTTCTCTGCTAATTTTGCAGCTATGACCGGGACCTCATCAGAACAGTATTCCTCGGTCCACGACCTCACAGTCAAGGACATTAGGGGTAATGACGTGGATCTCAGCATCTATAGAGGCAAGGTTTTGATCATCGTCAATGTTGCCTCTCAATGTGGGTTGACTACCTCTAACTATACTGAGCTAAATGAACTGTATGCAAAGTACAAGGATCAAGGTACTATCCCAACATACACCTGGTTAACCTGATCAAATAATTCTTAAATTTCATTACAGTCCTATTATATCCGGTTGTTGAACTGTTGGCAATGTATGTATCTTAAGACTAA

Ace file of the UniGene sp_v2.0_unigene74559

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	2.0e-29	69%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	glutathione peroxidase-like protein	-	-	1.45172e-37	78%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	PWWP	IPR000313	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQB1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 68 aas, your sequence is shorter than subject: 113 - 246

Fln protein: VVTLAVTHSTKSLSGPSFWIKLRVLDLFCLAFSANFAAMTGTSSEQYSSVHDLTVKDIRGNDVDLSIYRGKVLIIVNVASQCGLTTSNYTELNELYAKYKDQGTIPTYTWLT*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGTACTAAATCACTCTCAGGCCCTTCCTTTTGGATCAAACTAAGAGTACTTGATCTTTTCTGTCTTGCTTTCTCTGCTAATTTTGCAGCTATGACCGGGACCTCATCAGAACAGTATTCCTCGGTCCACGACCTCACAGTCAAGGACATTAGGGGTAATGACGTGGATCTCAGCATCTATAGAGGCAAGGTTTTGATCATCGTCAATGTTGCCTCTCAATGTGGGTTGACTACCTCTAACTATACTGAGCTAAATGAACTGTATGCAAAGTACAAGGATCAAGGTACTATCCCAACATACACCTGGTTAACCTGATCAAATAATTCTTAAATTTCATTACAGTCCTATTATATCCGGTTGTTGAACTGTTGGCAATGTATGTATCTTAAGACTAA

Fln Alignment:

AllPineV4_rep_c107705___STKSLSGPSFWIKLRV----LDLFCLAFSANFAAMTGTSSEQYSSVHDLTVKDIRGNDVDLSIYRGKVLIIVNVASQCGLTTSNYTELNELYAKYKDQG
A9NQB1_______________STKISSRFCSWIKPRVPPQDFVIFRVGFSANFTAMTGSSSKQSTSVYDFTVKDIRGNDVDLSIYKGKVLLIVNVASQCGLTNSNYNELNEVYTKYKDQG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain