SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74516

Length: 464 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene74516
GAAGAAATTCAGCTGGATGGGATTTAGGGTCAAGGAAAATTATAGTTTCTGATAAATTATTGGCAAAATATTCTGGTCTGAAAATCCCTTCTATGATTAGTATCATTGAATGTCATCAAGACAAGGTGTATGCAGTTCCTTTAGGTGCAGAAATACTGGCTTCTTCACTCAAAACAGAAATTGAGATGTTTTCTCTGGGTGATAATGTATTGGGTATCCAAGGTCATCCAGAGTATACTAGTGGCATTTTGTGCAGCCTCATGGATGGCCTGTTGAATAAGAACCTTATTCCTAAGAAGATGAGCGATGAGGCTAAAGCTTCCTTGCGAAAATGTCAACCGGACTCGAAGTTGTGGCAGAAAATTTGCAAGGCATTTCTGAAGGAATGAGGCAGAGCCAGGAGTACGTGCTAGCAGCTAAGGCTGGGGACTGGGTCTTGGGATTATAGCTGGAACTGTTAAATT

Ace file of the UniGene sp_v2.0_unigene74516

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	class I glutamine amidotransferase domain-containing protein [Arabidopsis thaliana] emb\|CAB79773.1\| putative protein [Arabidopsis thaliana] gb\|AEE85779.1\| class I glutamine amidotransferase domain-containing protein [Arabidopsis thaliana]	-	-	8.0e-25	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Blast2go	gmp synthase	-	-	1.54439e-39	65%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000991	-	0.0	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7U1H2

Fln msg: your sequence is shorter than subject: 129 - 248

Fln protein: RNSAGWDLGSRKIIVSDKLLAKYSGLKIPSMISIIECHQDKVYAVPLGAEILASSLKTEIEMFSLGDNVLGIQGHPEYTSGILCSLMDGLLNKNLIPKKMSDEAKASLRKCQPDSKLWQKICKAFLKE*

Protein Length: 130

Fln nts: GAAGAAATTCAGCTGGATGGGATTTAGGGTCAAGGAAAATTATAGTTTCTGATAAATTATTGGCAAAATATTCTGGTCTGAAAATCCCTTCTATGATTAGTATCATTGAATGTCATCAAGACAAGGTGTATGCAGTTCCTTTAGGTGCAGAAATACTGGCTTCTTCACTCAAAACAGAAATTGAGATGTTTTCTCTGGGTGATAATGTATTGGGTATCCAAGGTCATCCAGAGTATACTAGTGGCATTTTGTGCAGCCTCATGGATGGCCTGTTGAATAAGAACCTTATTCCTAAGAAGATGAGCGATGAGGCTAAAGCTTCCTTGCGAAAATGTCAACCGGACTCGAAGTTGTGGCAGAAAATTTGCAAGGCATTTCTGAAGGAATGA___GGCAGAGCCAGGAGTACGTGCTAGCAGCTAAGGCTGGGGACTGGGTCTTGGGATTATAGCTGGAACTGTTAAATT

Fln Alignment:

AllPineV4_rep_c107628___GWDLGSRKI-IVSDKLLAKYSGLK----IPSMISIIECHQDKVYAVPLGAEILASSLKTEIEMFSLGDNVLGIQGHPEYTSGILCSLMDGLLNKNLIPKKMSDEAKASLRKCQPDSKLWQKICKAFLK
D7U1H2_______________GWDIGLRKVRIVKD--LPPCSFLEDMEEIPPFLSIIECHQDEVWEVPLGAEVIAFSDKTGVEMFTIGDHIMGIQGHPEYTKDILCNLIDRLLNNDAIERGFAEEAKLTLQMAEPDRKCWEKICRTFLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain