SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74440

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene74440
CGTCGTGACCTTGGCTGTCACTCAGAGATTTTATCACATTCTTCAACCGGCGCTTTTCTGACGCATTGTGGTTGGAGCTCTGTCATGGAGGGAATGAGCGTGGGATTGCCTCTCATCGCTCTGCCGATGCAATGGGATCAGGGGTTGAATGCCAGATTGATTGTCACTGAATTGAAAGTGGGTGTGGAGGTCGCTAGAGGGGCCGACGGCGGAGCCAGCAGGGAGGACATTGCAGAGGTGTGAGGGCAGTAATGGCGCCGGAAGAGGGGAAGGAGGTGAGGCAGAGGGCATGGCAGATGGGAGACGTGTTCAGAAAGATGATATTGAATAGGGAAAGCTGTAAGGGATCTGAAGAGCGATATGTTGATAAGTTCGCTCAGCAGCTTCTTGCACTGGCCACGGCAACGAGCGGACATGGTTGCCATTGAATCGAATTCAGGAGCCGATATGCGTGTACTCTTTTTAATAACTATATTCAGGAGCCGATATGCATGTACTCTTTTAAATAACCATAACT

Ace file of the UniGene sp_v2.0_unigene74440 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucuronic acid:anthocyanin glucuronosyltransferase [Bellis perennis]	-	-	7.0e-16	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	udp-glucose:flavonoid glucoside -glucosyltransferase	-	-	1.4013e-44	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR43

Fln msg: Separated hits, possible frame ERROR between 231 and 240, your sequence is shorter than subject: 143 - 491

Fln protein: RRDLGCHSEILSHSSTGAFLTHCGWSSVMEGMSVGLPLIALPMQWDQGLNARLIVTELKVGVEVARGADGGASREDxxxxVRAVMAPEEGKEVRQRAWQMGDVFRKMILNRESCKGSEERYVDKFAQQLLALATATSGHGCH*

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGATTTTATCACATTCTTCAACCGGCGCTTTTCTGACGCATTGTGGTTGGAGCTCTGTCATGGAGGGAATGAGCGTGGGATTGCCTCTCATCGCTCTGCCGATGCAATGGGATCAGGGGTTGAATGCCAGATTGATTGTCACTGAATTGAAAGTGGGTGTGGAGGTCGCTAGAGGGGCCGACGGCGGAGCCAGCAGGGAGGACATxxxxxxxxxTGTGAGGGCAGTAATGGCGCCGGAAGAGGGGAAGGAGGTGAGGCAGAGGGCATGGCAGATGGGAGACGTGTTCAGAAAGATGATATTGAATAGGGAAAGCTGTAAGGGATCTGAAGAGCGATATGTTGATAAGTTCGCTCAGCAGCTTCTTGCACTGGCCACGGCAACGAGCGGACATGGTTGCCATTGAATCGAATTCAGGAGCCGATATGCGTGTACTCTTTTTAATAACTATATTCAGGAGCCGATATGCATGTACTCTTTTAAATAACCATAACT

Fln Alignment:

AllPineV4_c107481___DLGCHSEILSHSSTGAFLTHCGWSSVMEGMSVGLPLIALPMQWDQGLNARLIVTELKVGVEVARGADGGASREDIxxxVRAVMAPE---EGKEVRQRAWQMGDVFRKMILNRESCKGSEERYVDKFXXXXXXXXXXTSGHGCH
B8LR43_______________DWAPQKEILSHPSTGAFLTHCGWSSLTEGMSVGLPLIALPMQWDQGLNARLIVNELKVGVEVARRGDGAASREDIxxxVRAVMAPEDGEEGKDVRQRASQMGDMFRRTILNGES-KGSEERYIDKFVQHLLALATDKGGHGCH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain