SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74344

Length: 327 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene74344
CGTCGTGACCTTGGCTGTCACTCAGCGTTTTTTTAAAGGTCGATCGATGGCAGAACCTGGATCTGGAGACTTGACGACCAATAACCATCCAAATGATTGGCGATGCTACTGATTGGCAGCGCAACGTGGAGAAGAATTTGGATCCAGAGTTCAAGCGGTTCCTGCATGAACCCGGGAACCTGAGGTCTCTGCAGCGATTGCTTCAGTACCATGTGGTGCCGAGGAGGATTGTGGCGAAGGAATGGAGGAATGAGACCCATCAGTCTTCGAACAGAGATGGGTGTAGATCTGGGGGCGGTGATTCATCCCAATGCTGTGGTGAAGCCA

Ace file of the UniGene sp_v2.0_unigene74344

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fasciclin-like arabinogalactan protein 16 n=1 Tax=Gossypium hirsutum RepID=A9XTM1_GOSHI	-	-	9.0e-10	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	fasciclin-like arabinogalactan protein 17	-	-	3.51049e-17	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	3.51049e-17	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	FAS1 domain	IPR000782	-	0.0	-
Sma3	Myristoyl-CoA:protein N-myristoyltransferase	IPR000903	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXQ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 306 aas, your sequence is shorter than subject: 108 - 464

Fln protein: S*PWLSLSVFLKVDRWQNLDLET*RPITIQMIGDATDWQRNVEKNLDPEFKRFLHEPGNLRSLQRLLQYHVVPRRIVAKEWRNETHQSSNRDGCRSGGGDSSQCCGEA

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGTTTTTTTAAAGGTCGATCGATGGCAGAACCTGGATCTGGAGACTTGACGACCAATAACCATCCAAATGATTGGCGATGCTACTGATTGGCAGCGCAACGTGGAGAAGAATTTGGATCCAGAGTTCAAGCGGTTCCTGCATGAACCCGGGAACCTGAGGTCTCTGCAGCGATTGCTTCAGTACCATGTGGTGCCGAGGAGGATTGTGGCGAAGGAATGGAGGAATGAGACCCATCAGTCTTCGAACAGAGATGGGTGTAGATCTGGGGGCGGTGATTCATCCCAATGCTGTGGTGAAGCCA

Fln Alignment:

AllPineV4_rep_c107300___VEKNLDPEFKRFLHEPGNLRSLQRLLQYHVVPRRIVAKEWRNETHQ
A9NXQ4_______________LERKLDPEFKRFLHEPGNLKALQKLLMFHVVPRRIVAEDWRNGTHQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain