SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene74011

Length: 308 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene74011
CGTCGTGACCTTGGCTGTCACTCAATTCTCGAGACAAGATCCAACCGATCCACTATGTCACGAACATTGCTTCAATCTCGAAGCTATATCCACCACAAGACTGGATTGTGGCTTCATCCTTGCCTTTCAAGTTCAACCCAATTACGATTCAAATGGTTTTGGATCAGCTAGTTCCTAATAAATCCAGGGTTTCTGAAGATCTCCAAGGTTTATCTGCGCCGTTTTGCTGTCCAAGGGTTTCAATTTCAATTGTTTTTCAGGTCCGGAAGAAATTTTACATCGGTTTCATCGATATCAGCTTCTGGGGT

Ace file of the UniGene sp_v2.0_unigene74011

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Insulin-degrading enzyme, putative n=1 Tax=Ricinus communis RepID=B9T1F4_RICCO	-	-	3.0e-12	61%
FL-Next	sp=Zinc-metallopeptidase, peroxisomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	insulin degrading enzyme	-	-	2.21088e-14	72%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22941

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 492 aas, your sequence is shorter than subject: 102 - 970

Fln protein: S*PWLSLNSRDKIQPIHYVTNIASISKLYPPQDWIVASSLPFKFNPITIQMVLDQLVPNKSRVSEDLQGLSAPFCCPRVSISIVFQVRKKFYIGFIDISFWG

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCGAGACAAGATCCAACCGATCCACTATGTCACGAACATTGCTTCAATCTCGAAGCTATATCCACCACAAGACTGGATTGTGGCTTCATCCTTGCCTTTCAAGTTCAACCCAATTACGATTCAAATGGTTTTGGATCAGCTAGTTCCTAATAAATCCAGGGTTTCTGAAGATCTCCAAGGTTTATCTGCGCCGTTTTGCTGTCCAAGGGTTTCAATTTCAATTGTTTTTCAGGTCCGGAAGAAATTTTACATCGGTTTCATCGATATCAGCTTCTGGGGT

Fln Alignment:

AllPineV4_rep_c106654___RDKIQPIHYVTNIASISKLYPPQDWIVASSLPFKFNPITIQMVLDQLVPNKSRV
O22941_______________QDKIPPMSYIVDIASNMQIYPTKDWLVGSSLPTKFNPAIVQKVVDELSPSNFRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain