SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene73945

Length: 442 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene73945
CGTCGTGACCTTGGCTGTCACTCGCCTCGTTTCCAAAGGGATCAAGCCGGACTTTGGCCTGTACAGCTTGGAGAAGATCAAGAAGGTTATCCAGGCGGGCACCGGCGTGACGCCGGTGATCCAGTGCAGCAAAGGGCCGTTCGATAAGTTCCAGCTGTACCAGATCTTCATCTGCGTGGCCGGGGACGCCGAAACGCTCATCGAGTGCCCGAAACCGCAGAAGTTCACGTGCTCTGACGAGATCCTCTTCCACCCGTTCAAGAAGTGGATGCTAAAGCAGGCCGCGTCCTCGGTGTCCTACGCCGAAGCATTCGAGATGGCCGGCGCTGCCATGGGATACTGAGCTGCAGCTGCAGAGTGCAGATCGGTAGCTGGTCGGGCCCTTGACCGGCCTCGTCTTGTGAGTTGCGTTCCAGCGAATATTAATAGTAGTATATGCATG

Ace file of the UniGene sp_v2.0_unigene73945

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNase S-like protein n=1 Tax=Hordeum vulgare RepID=Q9M6N6_HORVU	-	-	7.00649e-45	92%
FL-Next	sp=Ribonuclease 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Blast2go	rnase s-like protein precursor	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease T2	IPR001568	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P42813

Fln msg: your sequence is shorter than subject: 114 - 230

Fln protein: VVTLAVTRLVSKGIKPDFGLYSLEKIKKVIQAGTGVTPVIQCSKGPFDKFQLYQIFICVAGDAETLIECPKPQKFTCSDEILFHPFKKWMLKQAASSVSYAEAFEMAGAAMGY*

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCGCCTCGTTTCCAAAGGGATCAAGCCGGACTTTGGCCTGTACAGCTTGGAGAAGATCAAGAAGGTTATCCAGGCGGGCACCGGCGTGACGCCGGTGATCCAGTGCAGCAAAGGGCCGTTCGATAAGTTCCAGCTGTACCAGATCTTCATCTGCGTGGCCGGGGACGCCGAAACGCTCATCGAGTGCCCGAAACCGCAGAAGTTCACGTGCTCTGACGAGATCCTCTTCCACCCGTTCAAGAAGTGGATGCTAAAGCAGGCCGCGTCCTCGGTGTCCTACGCCGAAGCATTCGAGATGGCCGGCGCTGCCATGGGATACTGA___GCTGCAGCTGCAGAGTGCAGATCGGTAGCTGGTCGGGCCCTTGACCGGCCTCGTCTTGTGAGTTGCGTTCCAGCGAATATTAATAGTAGTATATGCATG

Fln Alignment:

AllPineV4_rep_c106522___LVSKGIKPDFGLYSLEKIKKVIQAGTGVTPVIQCSKGPFDKFQLYQIFICVAGDAETLIECPKPQKFTCSDEILFHPF
P42813_______________LTKAGINPDGKSYSLESIRDSIKESIGFTPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEIEFPSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain