SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene73704

Length: 337 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene73704
CGTCGTGACCTTGGCTGTCACTCACATTTCAGTTAGGCAAGTCACCAGTGTATATTGCTTTCCTTCGCTTTATGGGAGATGGTCGTGACCTTGGCTTTCACTTAGTCTTGAAGTAGGGGCGAATGGCAGGAAGCTAATATGGCAAGGAGTGCCTAGGAGCATCCGGGACAGCCATTGTAAAGTTCGTGACAGCTATGACGGGCTAATCATACAAAGAAGCATGGCATTGTTCTTTTCTGGTGGAGACATGAAAGAATTGAAGTTGAAAGTTACTGGACGAATCTGGAAGGAACAATGAGCTATGAAGGTTGTCTTTTGTTACTACACGATTTTAAAG

Ace file of the UniGene sp_v2.0_unigene73704

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SINA [Phyllostachys praecox]	-	-	9.0e-31	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	e3 ubiquitin-protein ligase sinat5-like	-	-	7.05997e-35	93%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX30

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 99 - 323

Fln protein: VVTLAVTHISVRQVTSVYCFPSLYGRWS*PWLSLSLEVGANGRKLIWQGVPRSIRDSHCKVRDSYDGLIIQRSMALFFSGGDMKELKLKVTGRIWKEQ*

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCACATTTCAGTTAGGCAAGTCACCAGTGTATATTGCTTTCCTTCGCTTTATGGGAGATGGTCGTGACCTTGGCTTTCACTTAGTCTTGAAGTAGGGGCGAATGGCAGGAAGCTAATATGGCAAGGAGTGCCTAGGAGCATCCGGGACAGCCATTGTAAAGTTCGTGACAGCTATGACGGGCTAATCATACAAAGAAGCATGGCATTGTTCTTTTCTGGTGGAGACATGAAAGAATTGAAGTTGAAAGTTACTGGACGAATCTGGAAGGAACAATGA___GCTATGAAGGTTGTCTTTTGTTACTACACGATTTTAAAG

Fln Alignment:

AllPineV4_rep_c106044___SLSLEVGANGRKLIWQGVPRSIRDSHCKVRDSYDGLIIQRSMALFFSGGDMKELKLKVTGRIWKEQ
A9NX30_______________SYSLEVGANGRKMIWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain